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The map label for this gene is dedA [C]

Identifier: 41409960

GI number: 41409960

Start: 4324541

End: 4325233

Strand: Reverse

Name: dedA [C]

Synonym: MAP3862c

Alternate gene names: 41409960

Gene position: 4325233-4324541 (Counterclockwise)

Preceding gene: 41409961

Following gene: 41409950

Centisome position: 89.55

GC content: 68.69

Gene sequence:

>693_bases
ATGAGCACCGCCGTGACGGCCCTGCCCGACATCCTCGACCCGATGTATTGGTTGGGCGCCGACGGCGTCTTCGGCTCCGC
GGTGCTGCCCGGCATCCTGGTCATCGTCTTCATCGAGACCGGCCTGCTGTTCCCGCTGCTGCCCGGCGAGTCGCTGCTGT
TCACCGGCGGGCTGCTGGCCGCGCACCCCAACCCGCCGGCCAGCATCTGGGTGCTGGCCCCGGCCGTCGCGATCGTCGCG
GTGCTGGGCGATCAGACCGGGTACTTCATCGGGCGCCGGATCGGTCCGGCGCTGTTCAAGAAGGAAGATTCCCGGTTCTT
CAAGAAGCACTACGTGACCGAGTCGCACGCCTTCTTCGAGAAGTACGGGTCCTGGGCGGTCATCCTGGCCCGGTTCGCGC
CGTTCGTGCGCACCTTCGTCCCGGTCATCGCCGGGGTGTCCTACATGCGCTATCCCGTGTTCCTGGGTTTCGACATCGTC
GGCGGCATCGCCTGGGGTGGCGGCGCGACGCTGGCCGGCTACTTCCTGGGCAACGTGCCGTTCGTGCACCACAACCTGGA
GAAGATCATCCTGGGCATCCTGGTCGTCTCGCTGATGCCGGCGTTCGTCGCCGCCTGGCGGGGCTATCGGGGGCGGCGAC
GCCCCACGCGCACGCCCGAGCGGGAATCCGAGCGGCTGCCGGCGTCCGAGTAG

Upstream 100 bases:

>100_bases
CGCAGCCTGGACCTGCAGTACCGCGACGACCAGTGGAAGATCTGCCAGTCCGCCAGCGGATAGCCATGATTGCCGGTGCG
ACCGGTATGTTTGAGGCATC

Downstream 100 bases:

>100_bases
CCGGGCTTTAGAGCGCGACGGTGAAGTCGCAGCCGGTCTTGGCGCGCACCTCCTCGACCGTCACCCCCGGATGCAGCTCG
GTGAGCAGCAGCCCCCGGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSTAVTALPDILDPMYWLGADGVFGSAVLPGILVIVFIETGLLFPLLPGESLLFTGGLLAAHPNPPASIWVLAPAVAIVA
VLGDQTGYFIGRRIGPALFKKEDSRFFKKHYVTESHAFFEKYGSWAVILARFAPFVRTFVPVIAGVSYMRYPVFLGFDIV
GGIAWGGGATLAGYFLGNVPFVHHNLEKIILGILVVSLMPAFVAAWRGYRGRRRPTRTPERESERLPASE

Sequences:

>Translated_230_residues
MSTAVTALPDILDPMYWLGADGVFGSAVLPGILVIVFIETGLLFPLLPGESLLFTGGLLAAHPNPPASIWVLAPAVAIVA
VLGDQTGYFIGRRIGPALFKKEDSRFFKKHYVTESHAFFEKYGSWAVILARFAPFVRTFVPVIAGVSYMRYPVFLGFDIV
GGIAWGGGATLAGYFLGNVPFVHHNLEKIILGILVVSLMPAFVAAWRGYRGRRRPTRTPERESERLPASE
>Mature_229_residues
STAVTALPDILDPMYWLGADGVFGSAVLPGILVIVFIETGLLFPLLPGESLLFTGGLLAAHPNPPASIWVLAPAVAIVAV
LGDQTGYFIGRRIGPALFKKEDSRFFKKHYVTESHAFFEKYGSWAVILARFAPFVRTFVPVIAGVSYMRYPVFLGFDIVG
GIAWGGGATLAGYFLGNVPFVHHNLEKIILGILVVSLMPAFVAAWRGYRGRRRPTRTPERESERLPASE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=185, Percent_Identity=40, Blast_Score=147, Evalue=5e-37,
Organism=Escherichia coli, GI1789481, Length=152, Percent_Identity=36.1842105263158, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1789384, Length=165, Percent_Identity=30.3030303030303, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 25079; Mature: 24948

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAVTALPDILDPMYWLGADGVFGSAVLPGILVIVFIETGLLFPLLPGESLLFTGGLLA
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCEEE
AHPNPPASIWVLAPAVAIVAVLGDQTGYFIGRRIGPALFKKEDSRFFKKHYVTESHAFFE
ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KYGSWAVILARFAPFVRTFVPVIAGVSYMRYPVFLGFDIVGGIAWGGGATLAGYFLGNVP
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
FVHHNLEKIILGILVVSLMPAFVAAWRGYRGRRRPTRTPERESERLPASE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure 
STAVTALPDILDPMYWLGADGVFGSAVLPGILVIVFIETGLLFPLLPGESLLFTGGLLA
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEECCCCCCEEEECCEEE
AHPNPPASIWVLAPAVAIVAVLGDQTGYFIGRRIGPALFKKEDSRFFKKHYVTESHAFFE
ECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KYGSWAVILARFAPFVRTFVPVIAGVSYMRYPVFLGFDIVGGIAWGGGATLAGYFLGNVP
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
FVHHNLEKIILGILVVSLMPAFVAAWRGYRGRRRPTRTPERESERLPASE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]