| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409887
Identifier: 41409887
GI number: 41409887
Start: 4236162
End: 4237361
Strand: Reverse
Name: 41409887
Synonym: MAP3789c
Alternate gene names: NA
Gene position: 4237361-4236162 (Counterclockwise)
Preceding gene: 41409889
Following gene: 41409874
Centisome position: 87.73
GC content: 68.67
Gene sequence:
>1200_bases GTGGCGCCCGACTTGGATCCGTTCGACCCGCCCATCCCCGTTCCAGACGTTCCCGGCGCCGATGTACCGCCCGGCGCCGG CGGATTACCCCCCACTTCGGCGTTGTCGCCTCGTCAGCGAATGGTAGTCGAGGCCTCGGCTCTGGGTGATCTGGCCCTGC GCACCTGGGTGGCCTCGCTGCTGTCCACCACGGTGGCGCCGTTCGTGGTCGCCAACGCGCTGCGGCACGCCGACGCCGCC ACCGAACGCGCCAATCTCGAGTTCTACGCCGAGCTGGGCGCGGCGGCCGACCCCGACCGGTCCTTTCCGCCGCCCACCGA ACCGCCCCGGGTCACCTCCCGGCGGGCCAGCCCGTTGGCCGAATGGGTGGCCCGCGGCACGGTGGACAACCTCGCGTTCG ACAGCAGCTTCACCGCGGTCAACCCGGCCATGCGGGCGCGCTGGAGCGGGTGGGGCCGCAACAACGTGGTGCGCGCGCAG CATTGGCGCCACGACGACGGGCCGCGGCCCACGCTGTGCGTCATCCACGGTTTCCTGGGGTCGTCGTATCTGGCCAACGG GCGGTTCTTTTCGTTGCCCTGGTACTACCGGGCCGGCTACGACGTGTTGATGTACACCTTGCCTTTTCACGGCAAGCGGT CCGAAAGGTTCTCGCCCTTCAGCGGTTTCGGCTATTTCGCCGGTGGACTCAGCGGCTTCGCCGAGGCGATGGCCCAGGCC GTGCACGACTTTCGTTCGCTCATCGACTATCTGCGCCACACCGGTGTCGAGCGCATCGCGCTCACCGGCATCTCGCTGGG CGGCTACACCTCGGCGCTGGTGGCCTCGGTGGACGATCGGCTCGAGGCCGTCATCCCCAACTGTCCCGTCGTCACCCCGG CGACGCTGTTCGACGAATGGTTCCCGGCCAACAAGCTGGTCGGGCTGGGCCTGCGATCGTCCGACATCAGCCGAGCGCAG TTGGCCGCCGGGTTGGCCTACCACTGCCCGCTCACCTACCGGCCGGTGCTGGCCAAAGACCGGCGGATGATCATCACCGG CCTCGGTGACCGGATGGCCCCGCCCGAGCGCGCCGTCAAGCTATGGCAGCACTGGGATCGTTGTGCGCTGCACTGGTTTC CGGGCAGCCATGTGCTGCACATCAGCCAGCTGGACTACCTGCGCCGGATGACCGCGTTCCTGCAGCAGGTCATGTTCTAG
Upstream 100 bases:
>100_bases TCGACACCGCCCCTGCGTGGGCCCGAGATGACATCACGGCGAAGCGAAACGGGCCGAACGCTGTAGGAAGCGCGCGACGG CCGGGCTAGCATCGGCGTTC
Downstream 100 bases:
>100_bases CGGCGGCGACGGTGTCGGCGTCACCGGCCGGCGCTCCTTGGGTGGGCCAGTGCAGCCGGTCGAGCAGGTCCGCGGTCGCC GCGGTGTGCCCGTCCAGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MAPDLDPFDPPIPVPDVPGADVPPGAGGLPPTSALSPRQRMVVEASALGDLALRTWVASLLSTTVAPFVVANALRHADAA TERANLEFYAELGAAADPDRSFPPPTEPPRVTSRRASPLAEWVARGTVDNLAFDSSFTAVNPAMRARWSGWGRNNVVRAQ HWRHDDGPRPTLCVIHGFLGSSYLANGRFFSLPWYYRAGYDVLMYTLPFHGKRSERFSPFSGFGYFAGGLSGFAEAMAQA VHDFRSLIDYLRHTGVERIALTGISLGGYTSALVASVDDRLEAVIPNCPVVTPATLFDEWFPANKLVGLGLRSSDISRAQ LAAGLAYHCPLTYRPVLAKDRRMIITGLGDRMAPPERAVKLWQHWDRCALHWFPGSHVLHISQLDYLRRMTAFLQQVMF
Sequences:
>Translated_399_residues MAPDLDPFDPPIPVPDVPGADVPPGAGGLPPTSALSPRQRMVVEASALGDLALRTWVASLLSTTVAPFVVANALRHADAA TERANLEFYAELGAAADPDRSFPPPTEPPRVTSRRASPLAEWVARGTVDNLAFDSSFTAVNPAMRARWSGWGRNNVVRAQ HWRHDDGPRPTLCVIHGFLGSSYLANGRFFSLPWYYRAGYDVLMYTLPFHGKRSERFSPFSGFGYFAGGLSGFAEAMAQA VHDFRSLIDYLRHTGVERIALTGISLGGYTSALVASVDDRLEAVIPNCPVVTPATLFDEWFPANKLVGLGLRSSDISRAQ LAAGLAYHCPLTYRPVLAKDRRMIITGLGDRMAPPERAVKLWQHWDRCALHWFPGSHVLHISQLDYLRRMTAFLQQVMF >Mature_398_residues APDLDPFDPPIPVPDVPGADVPPGAGGLPPTSALSPRQRMVVEASALGDLALRTWVASLLSTTVAPFVVANALRHADAAT ERANLEFYAELGAAADPDRSFPPPTEPPRVTSRRASPLAEWVARGTVDNLAFDSSFTAVNPAMRARWSGWGRNNVVRAQH WRHDDGPRPTLCVIHGFLGSSYLANGRFFSLPWYYRAGYDVLMYTLPFHGKRSERFSPFSGFGYFAGGLSGFAEAMAQAV HDFRSLIDYLRHTGVERIALTGISLGGYTSALVASVDDRLEAVIPNCPVVTPATLFDEWFPANKLVGLGLRSSDISRAQL AAGLAYHCPLTYRPVLAKDRRMIITGLGDRMAPPERAVKLWQHWDRCALHWFPGSHVLHISQLDYLRRMTAFLQQVMF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019149 [H]
Pfam domain/function: PF09752 DUF2048 [H]
EC number: NA
Molecular weight: Translated: 43866; Mature: 43735
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPDLDPFDPPIPVPDVPGADVPPGAGGLPPTSALSPRQRMVVEASALGDLALRTWVASL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LSTTVAPFVVANALRHADAATERANLEFYAELGAAADPDRSFPPPTEPPRVTSRRASPLA HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH EWVARGTVDNLAFDSSFTAVNPAMRARWSGWGRNNVVRAQHWRHDDGPRPTLCVIHGFLG HHHHHCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEHHCCCCCCCCCCEEEEEEHHHC SSYLANGRFFSLPWYYRAGYDVLMYTLPFHGKRSERFSPFSGFGYFAGGLSGFAEAMAQA CHHCCCCEEEECCCHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VHDFRSLIDYLRHTGVERIALTGISLGGYTSALVASVDDRLEAVIPNCPVVTPATLFDEW HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FPANKLVGLGLRSSDISRAQLAAGLAYHCPLTYRPVLAKDRRMIITGLGDRMAPPERAVK CCCCCEEECCCCCCCCHHHHHHHCHHEECCCCCCCHHHCCCEEEEEECCCCCCCHHHHHH LWQHWDRCALHWFPGSHVLHISQLDYLRRMTAFLQQVMF HHHHHHHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure APDLDPFDPPIPVPDVPGADVPPGAGGLPPTSALSPRQRMVVEASALGDLALRTWVASL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH LSTTVAPFVVANALRHADAATERANLEFYAELGAAADPDRSFPPPTEPPRVTSRRASPLA HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHH EWVARGTVDNLAFDSSFTAVNPAMRARWSGWGRNNVVRAQHWRHDDGPRPTLCVIHGFLG HHHHHCCHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEHHCCCCCCCCCCEEEEEEHHHC SSYLANGRFFSLPWYYRAGYDVLMYTLPFHGKRSERFSPFSGFGYFAGGLSGFAEAMAQA CHHCCCCEEEECCCHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH VHDFRSLIDYLRHTGVERIALTGISLGGYTSALVASVDDRLEAVIPNCPVVTPATLFDEW HHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH FPANKLVGLGLRSSDISRAQLAAGLAYHCPLTYRPVLAKDRRMIITGLGDRMAPPERAVK CCCCCEEECCCCCCCCHHHHHHHCHHEECCCCCCCHHHCCCEEEEEECCCCCCCHHHHHH LWQHWDRCALHWFPGSHVLHISQLDYLRRMTAFLQQVMF HHHHHHHHEEEECCCCCEEEHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]