| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409874
Identifier: 41409874
GI number: 41409874
Start: 4218991
End: 4220100
Strand: Reverse
Name: 41409874
Synonym: MAP3776c
Alternate gene names: NA
Gene position: 4220100-4218991 (Counterclockwise)
Preceding gene: 41409887
Following gene: 41409873
Centisome position: 87.38
GC content: 64.59
Gene sequence:
>1110_bases ATGGCGACGGTGGGCGCATGTTGCCGCTCGGGCGGGCCAGCCGGGGTCCCGCGGAACCGGGCCGGCGCGCACCGCGACGC GGACCGCGTTTCCGGAAAGTCTCGCGCATTAGATATGAAAACGGTTATCGTTTGCGGTGTGGGTGGGTTGCTCTCGCGGT GGCACGGCGCCCCTATCGCTACTGTCCTGGTGCTGACAGTCGTAACGAGTTGCTCGTCAAGCCCGACCCAAACAGCCGAG GGGTCCCGTAATGCCGCCTCGCCATCAGCCATTGGCAGAACGGCCGCGCCGCCGTGTCCCACCGCCCCACTCGCTGTCGT GGTCAGCGTGGATCAGTGGGGCGACATTGTCTCCGAGCTGGGCGGCGCCTGCGCGAACGTCAAGACCGTGCTCGCCAGCT CGTCGGTCGACCCGCACGATTACGAGCCGTCACCGGCCGACGCCGCTGACTTTATGAACGCGAAACTTATCGTGGTCAAC GGTGCAGGGTACGACTCGTGGGCATCCAAGCTGGCCGGCAGCTCCGCTTCCGGTGCCCCCTTGGTGAGCGCCGCGGCAGT CACGACAACACCGGATGGAGCCAACCCTCACCTGTGGTACCTGCCCTCCGCGGTGACCGCCGTTGCTGATGCGGTAACGC AAGAATTGAGCAGAATGGAACCGCCTGCCGCCGGCTACTTCAGCCAGCGGAGAGCGCAATTCACCAGTGCGACAAGGCTA TACGTGAACCTGATCGCCAAGATCAAGGCCGAGGCGGCGGGTAAATCCTATGGGGCCACAGAGACGGTCTTTGACTACCA GGCGCAAGCGGCGGGCCTGGTCAACAAGACCCCTGCCGGGTACCGGCGGGCATCGGCCAACGAATCGGAACCCTCACCCG GAGACGTTGACGCGTTCCTCACCGCCCTTGCCGGCCGGCATATCGACCTCTTGATCTACAACACGCAGACCGAGGGCTCA ATCCCCGAGGAAATCCGATCAGCCGCGGAGCAGTCAAGCGTGCCCGTCGTCAAGATAACCGAGACCGTACCGCCCGGGGA GACGTCGTTTGAAGACTGGCAGTACGGGCAGCTCGTCCAACTGGCCAAGGCGCTCCATGTCGCTGTCTGA
Upstream 100 bases:
>100_bases CCGACGCTCGTAGTGATGTCCCAGGTATCGCCTTCGCTTCGCACCCCGCCCACAGTACGCCGCCGGGCGGTGAGCCCTTT TCCGCTGGCGCGCAACGCGA
Downstream 100 bases:
>100_bases CGTCGCCGCCCCTCCCTCCGCCTTGGCTTTCACCGATGTGAGTGCCGTGCGCGGCGGACGTCTGATCTGGTCGCATGCCA CGTTCGATATTCCCGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 369; Mature: 368
Protein sequence:
>369_residues MATVGACCRSGGPAGVPRNRAGAHRDADRVSGKSRALDMKTVIVCGVGGLLSRWHGAPIATVLVLTVVTSCSSSPTQTAE GSRNAASPSAIGRTAAPPCPTAPLAVVVSVDQWGDIVSELGGACANVKTVLASSSVDPHDYEPSPADAADFMNAKLIVVN GAGYDSWASKLAGSSASGAPLVSAAAVTTTPDGANPHLWYLPSAVTAVADAVTQELSRMEPPAAGYFSQRRAQFTSATRL YVNLIAKIKAEAAGKSYGATETVFDYQAQAAGLVNKTPAGYRRASANESEPSPGDVDAFLTALAGRHIDLLIYNTQTEGS IPEEIRSAAEQSSVPVVKITETVPPGETSFEDWQYGQLVQLAKALHVAV
Sequences:
>Translated_369_residues MATVGACCRSGGPAGVPRNRAGAHRDADRVSGKSRALDMKTVIVCGVGGLLSRWHGAPIATVLVLTVVTSCSSSPTQTAE GSRNAASPSAIGRTAAPPCPTAPLAVVVSVDQWGDIVSELGGACANVKTVLASSSVDPHDYEPSPADAADFMNAKLIVVN GAGYDSWASKLAGSSASGAPLVSAAAVTTTPDGANPHLWYLPSAVTAVADAVTQELSRMEPPAAGYFSQRRAQFTSATRL YVNLIAKIKAEAAGKSYGATETVFDYQAQAAGLVNKTPAGYRRASANESEPSPGDVDAFLTALAGRHIDLLIYNTQTEGS IPEEIRSAAEQSSVPVVKITETVPPGETSFEDWQYGQLVQLAKALHVAV >Mature_368_residues ATVGACCRSGGPAGVPRNRAGAHRDADRVSGKSRALDMKTVIVCGVGGLLSRWHGAPIATVLVLTVVTSCSSSPTQTAEG SRNAASPSAIGRTAAPPCPTAPLAVVVSVDQWGDIVSELGGACANVKTVLASSSVDPHDYEPSPADAADFMNAKLIVVNG AGYDSWASKLAGSSASGAPLVSAAAVTTTPDGANPHLWYLPSAVTAVADAVTQELSRMEPPAAGYFSQRRAQFTSATRLY VNLIAKIKAEAAGKSYGATETVFDYQAQAAGLVNKTPAGYRRASANESEPSPGDVDAFLTALAGRHIDLLIYNTQTEGSI PEEIRSAAEQSSVPVVKITETVPPGETSFEDWQYGQLVQLAKALHVAV
Specific function: Unknown
COG id: COG0803
COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38007; Mature: 37876
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MATVGACCRSGGPAGVPRNRAGAHRDADRVSGKSRALDMKTVIVCGVGGLLSRWHGAPIA CCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHCCCHHEEEEECCHHHHHHHCCCHHH TVLVLTVVTSCSSSPTQTAEGSRNAASPSAIGRTAAPPCPTAPLAVVVSVDQWGDIVSEL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHH GGACANVKTVLASSSVDPHDYEPSPADAADFMNAKLIVVNGAGYDSWASKLAGSSASGAP CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCC LVSAAAVTTTPDGANPHLWYLPSAVTAVADAVTQELSRMEPPAAGYFSQRRAQFTSATRL CEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH YVNLIAKIKAEAAGKSYGATETVFDYQAQAAGLVNKTPAGYRRASANESEPSPGDVDAFL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH TALAGRHIDLLIYNTQTEGSIPEEIRSAAEQSSVPVVKITETVPPGETSFEDWQYGQLVQ HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH LAKALHVAV HHHHHHHCC >Mature Secondary Structure ATVGACCRSGGPAGVPRNRAGAHRDADRVSGKSRALDMKTVIVCGVGGLLSRWHGAPIA CCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHCCCHHEEEEECCHHHHHHHCCCHHH TVLVLTVVTSCSSSPTQTAEGSRNAASPSAIGRTAAPPCPTAPLAVVVSVDQWGDIVSEL HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEECHHHHHHHHHH GGACANVKTVLASSSVDPHDYEPSPADAADFMNAKLIVVNGAGYDSWASKLAGSSASGAP CCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCEEEEEECCCCHHHHHHHCCCCCCCCC LVSAAAVTTTPDGANPHLWYLPSAVTAVADAVTQELSRMEPPAAGYFSQRRAQFTSATRL CEEEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH YVNLIAKIKAEAAGKSYGATETVFDYQAQAAGLVNKTPAGYRRASANESEPSPGDVDAFL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH TALAGRHIDLLIYNTQTEGSIPEEIRSAAEQSSVPVVKITETVPPGETSFEDWQYGQLVQ HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHH LAKALHVAV HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA