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The map label for this gene is ybgJ [H]

Identifier: 41409807

GI number: 41409807

Start: 4126099

End: 4126773

Strand: Reverse

Name: ybgJ [H]

Synonym: MAP3709c

Alternate gene names: 41409807

Gene position: 4126773-4126099 (Counterclockwise)

Preceding gene: 41409808

Following gene: 41409806

Centisome position: 85.44

GC content: 71.56

Gene sequence:

>675_bases
ATGAGCGTGACGGATCTTAGCGGCGACCTGGCCCACCACCTGCCGACAGCCCTGGTCGGCAACGCCGTGCTGGACTACGG
CGATCGAGCGCTGATGGTGCAATGCGGCAGTACCGCAGAGGTATTGGCGTGGGCGCAGGCGCTGCGCGCCGCGGCGCTGC
CCGGCGTGGTCGACATCGTGCCTGCGGCCCGCACGGTGCTGGTCAAGCTCGACGACCCCGGCCGGCAACGCCTCCTCCGG
CAGCGGCTGCGCAAGATGAACGTCACCGCCGCGTCCACCCCGCCCGCCGAGCGCCACGCCGACGTGGTCATCGACGTCGT
CTACGACGGCCCGGATTTGGCCGAGGTCGCCGAACACACCGGACTGACCATCCCGCAGCTGATCGACGCCCACACCGGCA
CCCCGTGGCAGGTCGGATTCAGTGGATTCGCACCGGGTTTCGCCTACCTGGTGGACGGCGACCCGCGGCTGCGGGTGCCG
CGGCGCGCCGAGCCGCGCACCGCCGTGCCTGCCGGCTCGGTGGCGCTGGCCGGCGAATTCAGCGCGATCTATCCCCGCCG
GTCGCCCGGCGGCTGGCAGCTTATCGGGCACACCGACGCGGTGCTGTGGGATCTGCAGCGACCCAACCCGGCCCTGCTGA
CGCAGGGCATGTGGGTTCAGTTCCGGGCCGTCTAG

Upstream 100 bases:

>100_bases
TCGCGGCTGTTTGAGCGTTTGCTAAGGCAGCTCTGGCAGTGCTCGAAAATCCGTCGGCCACCCCTCGCACGGGCCGCGAT
CCCGGGGTTACCGTCGAGTA

Downstream 100 bases:

>100_bases
CCTCGCTAAGGAGACAGCTGTGCCATTCCTGGAGATACTGCGCACCGGGCCGCTGGCCGTCGTCGAAGACCTGGGCCGGC
CGGGCCTGGCCCACCTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSVTDLSGDLAHHLPTALVGNAVLDYGDRALMVQCGSTAEVLAWAQALRAAALPGVVDIVPAARTVLVKLDDPGRQRLLR
QRLRKMNVTAASTPPAERHADVVIDVVYDGPDLAEVAEHTGLTIPQLIDAHTGTPWQVGFSGFAPGFAYLVDGDPRLRVP
RRAEPRTAVPAGSVALAGEFSAIYPRRSPGGWQLIGHTDAVLWDLQRPNPALLTQGMWVQFRAV

Sequences:

>Translated_224_residues
MSVTDLSGDLAHHLPTALVGNAVLDYGDRALMVQCGSTAEVLAWAQALRAAALPGVVDIVPAARTVLVKLDDPGRQRLLR
QRLRKMNVTAASTPPAERHADVVIDVVYDGPDLAEVAEHTGLTIPQLIDAHTGTPWQVGFSGFAPGFAYLVDGDPRLRVP
RRAEPRTAVPAGSVALAGEFSAIYPRRSPGGWQLIGHTDAVLWDLQRPNPALLTQGMWVQFRAV
>Mature_223_residues
SVTDLSGDLAHHLPTALVGNAVLDYGDRALMVQCGSTAEVLAWAQALRAAALPGVVDIVPAARTVLVKLDDPGRQRLLRQ
RLRKMNVTAASTPPAERHADVVIDVVYDGPDLAEVAEHTGLTIPQLIDAHTGTPWQVGFSGFAPGFAYLVDGDPRLRVPR
RAEPRTAVPAGSVALAGEFSAIYPRRSPGGWQLIGHTDAVLWDLQRPNPALLTQGMWVQFRAV

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=182, Percent_Identity=41.7582417582418, Blast_Score=124, Evalue=6e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 24030; Mature: 23899

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVTDLSGDLAHHLPTALVGNAVLDYGDRALMVQCGSTAEVLAWAQALRAAALPGVVDIV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHC
PAARTVLVKLDDPGRQRLLRQRLRKMNVTAASTPPAERHADVVIDVVYDGPDLAEVAEHT
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHC
GLTIPQLIDAHTGTPWQVGFSGFAPGFAYLVDGDPRLRVPRRAEPRTAVPAGSVALAGEF
CCCHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC
SAIYPRRSPGGWQLIGHTDAVLWDLQRPNPALLTQGMWVQFRAV
CEECCCCCCCCEEEEECCCEEEEECCCCCHHHEECCCEEEEEEC
>Mature Secondary Structure 
SVTDLSGDLAHHLPTALVGNAVLDYGDRALMVQCGSTAEVLAWAQALRAAALPGVVDIV
CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHCCCHHHHC
PAARTVLVKLDDPGRQRLLRQRLRKMNVTAASTPPAERHADVVIDVVYDGPDLAEVAEHT
CCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHC
GLTIPQLIDAHTGTPWQVGFSGFAPGFAYLVDGDPRLRVPRRAEPRTAVPAGSVALAGEF
CCCHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCC
SAIYPRRSPGGWQLIGHTDAVLWDLQRPNPALLTQGMWVQFRAV
CEECCCCCCCCEEEEECCCEEEEECCCCCHHHEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]