Click here to switch to the map view.

The map label for this gene is ycdL [C]

Identifier: 41408476

GI number: 41408476

Start: 2673007

End: 2673636

Strand: Direct

Name: ycdL [C]

Synonym: MAP2378

Alternate gene names: 41408476

Gene position: 2673007-2673636 (Clockwise)

Preceding gene: 41408475

Following gene: 41408477

Centisome position: 55.34

GC content: 71.11

Gene sequence:

>630_bases
ATGACGGACCTGGCAGAGCTGGTGGCGCCGGCGCACACCGCCGTCATCACGCAAGAAGTCCAGGGTGCGGTCGTCGGTCC
CGACGCCGGCCTGGGCGCGCTGGCCGCGGAAGCCCGCCGGGTCGCGCTGCCGAACATCGTGCGGCTGTTGCCGCCGGCCC
GCGCCGCCGGTGTGCGAATCGTGCACTGCCTGGTGCAGCGGCGCCCGGACGGACTGGGCTCCAATCACAACGCCAAGATC
TTCGCGTTGGGTCGCCGCTCCGGGCAAGGCCGGGTGGACATCTCCCCCGGCACCCCGGGGGCCACGCTGTTGCCCGAATT
AGGCCCCGAGCCAAGCGATTTGGTGCTGAGCCGGTGGCATGGCGTGGGCCCGATGGGCGGTACCGACCTCGACGCGGTGT
TGCGCAACCTGGGCGTGTCCACCCTGGTGGTGGTCGGCGTCTCGTTGAACATCGCGATTCCCAACGTCGTCATGGATGCG
GTCAACGCCGCCTACCGCGTCGTCGTCCCGCGCGACGCCGTCGCCGGCGTCCCCGCCGAGTACGGCGAGGCGGTCATCGC
GAACACGTTGTCGCTGCTGGCCACCATCACCACCACCGACGAGCTGCTGCGCGCCTGGAGCCGGCCATGA

Upstream 100 bases:

>100_bases
ACCCGCCGTTGTCCAAGGTCGACGCCAAAGGCTATATGGCACTGCGCAAATGGGCCACCCAATTCTATGAGCTGCCGCCG
GCCGGAACGTCGTCACCGGC

Downstream 100 bases:

>100_bases
CCGACACCGCACCCGGCACGCTGGACGGGTCTGCCGGCGGATTCCCCGAGATCAAGCCCGCCGAGTCGGCGCCGCCGGGT
CTGGGCCGGCTGATCGCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Isochorismatase; Isochorismatase Family Protein; Hydrolase; LOW QUALITY PROTEIN Isochorismatase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTDLAELVAPAHTAVITQEVQGAVVGPDAGLGALAAEARRVALPNIVRLLPPARAAGVRIVHCLVQRRPDGLGSNHNAKI
FALGRRSGQGRVDISPGTPGATLLPELGPEPSDLVLSRWHGVGPMGGTDLDAVLRNLGVSTLVVVGVSLNIAIPNVVMDA
VNAAYRVVVPRDAVAGVPAEYGEAVIANTLSLLATITTTDELLRAWSRP

Sequences:

>Translated_209_residues
MTDLAELVAPAHTAVITQEVQGAVVGPDAGLGALAAEARRVALPNIVRLLPPARAAGVRIVHCLVQRRPDGLGSNHNAKI
FALGRRSGQGRVDISPGTPGATLLPELGPEPSDLVLSRWHGVGPMGGTDLDAVLRNLGVSTLVVVGVSLNIAIPNVVMDA
VNAAYRVVVPRDAVAGVPAEYGEAVIANTLSLLATITTTDELLRAWSRP
>Mature_208_residues
TDLAELVAPAHTAVITQEVQGAVVGPDAGLGALAAEARRVALPNIVRLLPPARAAGVRIVHCLVQRRPDGLGSNHNAKIF
ALGRRSGQGRVDISPGTPGATLLPELGPEPSDLVLSRWHGVGPMGGTDLDAVLRNLGVSTLVVVGVSLNIAIPNVVMDAV
NAAYRVVVPRDAVAGVPAEYGEAVIANTLSLLATITTTDELLRAWSRP

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21579; Mature: 21448

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLAELVAPAHTAVITQEVQGAVVGPDAGLGALAAEARRVALPNIVRLLPPARAAGVRI
CCCHHHHHCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VHCLVQRRPDGLGSNHNAKIFALGRRSGQGRVDISPGTPGATLLPELGPEPSDLVLSRWH
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHC
GVGPMGGTDLDAVLRNLGVSTLVVVGVSLNIAIPNVVMDAVNAAYRVVVPRDAVAGVPAE
CCCCCCCCCHHHHHHHCCHHEEEEEEEEEEEEHHHHHHHHHHHHEEEEECCHHHHCCCHH
YGEAVIANTLSLLATITTTDELLRAWSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TDLAELVAPAHTAVITQEVQGAVVGPDAGLGALAAEARRVALPNIVRLLPPARAAGVRI
CCHHHHHCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VHCLVQRRPDGLGSNHNAKIFALGRRSGQGRVDISPGTPGATLLPELGPEPSDLVLSRWH
HHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHC
GVGPMGGTDLDAVLRNLGVSTLVVVGVSLNIAIPNVVMDAVNAAYRVVVPRDAVAGVPAE
CCCCCCCCCHHHHHHHCCHHEEEEEEEEEEEEHHHHHHHHHHHHEEEEECCHHHHCCCHH
YGEAVIANTLSLLATITTTDELLRAWSRP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA