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The map label for this gene is secD

Identifier: 41407141

GI number: 41407141

Start: 1090425

End: 1092248

Strand: Direct

Name: secD

Synonym: MAP1043

Alternate gene names: 41407141

Gene position: 1090425-1092248 (Clockwise)

Preceding gene: 41407140

Following gene: 41407142

Centisome position: 22.58

GC content: 71.66

Gene sequence:

>1824_bases
GTGGCATCGTCGTCCGTGCCGGTGCACCCCGCCCGCTACCTCTCGGTCTTCTTGCTGCTGCTCGTGGGCGTCTACCTGCT
GGTGTTCCTCACCGGGGACAAGCGGGCCGCGCCCAAGCTCGGCATCGATCTGCAGGGCGGCACCCGCGTCACGCTGACCG
CGCGCACGCCCGACGGTTCGGCACCCAGCCGTGAGGCGCTGGCCCAGGCGCAGCAGATCATCAGCGCCCGGGTCAACGGG
CTGGGCGTGTCGGGGTCGGAGGTGGTGGTCGACGGCGACAACCTGATCATCACGGTCCCCGGCAACGACGGCAACGAGGC
CCGCAACCTGGGCCAGACCGCCCGCCTCTACATCCGCCCGGTGCTCAACTCGATGCCGGCGCAAAGCGGCGAGCCCAAGC
CCGCGCCGCGCCAGCCCGCGCAACCCGCGCCCGGCCAGCCCGCACCGGGCCAGCCCGCACCCGCACCGGGCCAGCCCGCG
CCCGCGCCGGGGCAGCCGGCCCCCGGCCAGCCCGTACCTGCGCCCGCCCAGCCGGGCGCCGCACCCGCTCAGCCGCGGCC
CTACCCGCAGGACCCGCCGCCGTCGCCCAGCCCGGCGCCCGCTCCGGCCCCGGCGCCCGGCCCGGCCCCGGCGCCCGCTC
CGGCCCCCTCTCCAGGGGAGGCGCCGCCCGGCGAGCAACCCGCCCCGCCGGATCCGCGCAAGGACCTCGCCGAGCGCATC
GCCGAGGAGAAGAAGTGGCGGCAGAGCACCCGTCAGGGCATCCAGTTCCTGGCCCTGCAATTCCAGGCCACCCGCTGCGA
CAAGGACGACATCCTGGCCGGCAACGACGACCCCGCCCAGCCGTTGATCACCTGCTCGACCGACCACAAGGTGGCCTACC
TGCTCGGCCCGTCGATCATCAGCGGCGACCAGATCAAGGACGCCAGCGCGAGCCAGAACCAGCGCGGCATCGGCTTCGTC
GTCGACCTGCAGTTCAAACCCGCCGCCGCCAACACCTGGGCGGACTTCACCGCCGCCCACATCGGCACCCAGACCGCGTT
CACCCTGGACTCCCAGGTCGTCAGCGCCCCGATGATCCAGGAAGCGATCCCGGGCGGGCGCACCCAGATCAGCGGCGGCG
ACCCGCCCTTCACCGCGGCCACCGCCAAGCAGCTGGCCAACGTCCTCAAGTACGGGTCGTTGCCGCTGTCCTTCCAGTCA
TCGGAGGCCCAAACCGTCTCGGCCACACTGGGATTGACGTCGCTGCGCGCCGGGCTGATCGCCGGTGCCATCGGCCTGCT
GCTGGTGTTGCTGTATTCGCTGCTGTACTACCGGGTGCTGGGCCTGCTCACCGCGCTGTCGTTGGCCGCTTCGGGCGCAA
TGGTTTTCGCGATCCTGATCCTGCTGGGCAGGTACATCAACTACACGCTGGACCTGGCCGGCATCGCCGGTCTGATCATC
GGCATCGGCACCACCGCCGACTCCTTCGTGGTCTTCTTCGAGCGCATCAAGGACGAGATCCGCGAAGGCCGCACCTTCCG
CTCGGCGGTGCCCCGCGGTTGGACGCGGGCGCGTAAGACGATCGTCTCGGGCAACGCGGTCACCTTCCTGGCCGCGGCCG
TGCTGTACTTCCTGGCCATCGGCCAGGTGAAGGGCTTCGCGTTCACGCTGGGCCTCACCACGATCCTGGACCTGGTGGTG
GTGTTCCTGGTGACCTGGCCGCTGGTATACCTGGCGTCCAAGTCGCCGACGCTGGCCAAGCCGGCCTACAACGGCCTGGG
CGCTGTTCAGCAGGTCGCCCGCGAACGCCGGGCGGCGGCGCACGTGAGCACGGGACAGGGATAG

Upstream 100 bases:

>100_bases
CGCCGGCGGACCGCTCGCGCAACCGTCGGGCCGCGGCCACGTAGTCTTTTCTAGGCTCTGTCCGGGGCAAGGAACCGATT
CTCGAGGAGATTGAAGGAAC

Downstream 100 bases:

>100_bases
CGATGACTTCCTCCAAGGCCTCCAAAGCCGCCAAGGGCGCGACCGAGATCACCGAAACCTCTTCGGGCGCTTCGGAATTG
ACCGACAGCGACGCCGCCGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 606

Protein sequence:

>607_residues
MASSSVPVHPARYLSVFLLLLVGVYLLVFLTGDKRAAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVNG
LGVSGSEVVVDGDNLIITVPGNDGNEARNLGQTARLYIRPVLNSMPAQSGEPKPAPRQPAQPAPGQPAPGQPAPAPGQPA
PAPGQPAPGQPVPAPAQPGAAPAQPRPYPQDPPPSPSPAPAPAPAPGPAPAPAPAPSPGEAPPGEQPAPPDPRKDLAERI
AEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFV
VDLQFKPAAANTWADFTAAHIGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQS
SEAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTLDLAGIAGLII
GIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVV
VFLVTWPLVYLASKSPTLAKPAYNGLGAVQQVARERRAAAHVSTGQG

Sequences:

>Translated_607_residues
MASSSVPVHPARYLSVFLLLLVGVYLLVFLTGDKRAAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVNG
LGVSGSEVVVDGDNLIITVPGNDGNEARNLGQTARLYIRPVLNSMPAQSGEPKPAPRQPAQPAPGQPAPGQPAPAPGQPA
PAPGQPAPGQPVPAPAQPGAAPAQPRPYPQDPPPSPSPAPAPAPAPGPAPAPAPAPSPGEAPPGEQPAPPDPRKDLAERI
AEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFV
VDLQFKPAAANTWADFTAAHIGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQS
SEAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTLDLAGIAGLII
GIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVV
VFLVTWPLVYLASKSPTLAKPAYNGLGAVQQVARERRAAAHVSTGQG
>Mature_606_residues
ASSSVPVHPARYLSVFLLLLVGVYLLVFLTGDKRAAPKLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVNGL
GVSGSEVVVDGDNLIITVPGNDGNEARNLGQTARLYIRPVLNSMPAQSGEPKPAPRQPAQPAPGQPAPGQPAPAPGQPAP
APGQPAPGQPVPAPAQPGAAPAQPRPYPQDPPPSPSPAPAPAPAPGPAPAPAPAPSPGEAPPGEQPAPPDPRKDLAERIA
EEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHKVAYLLGPSIISGDQIKDASASQNQRGIGFVV
DLQFKPAAANTWADFTAAHIGTQTAFTLDSQVVSAPMIQEAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQSS
EAQTVSATLGLTSLRAGLIAGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTLDLAGIAGLIIG
IGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVV
FLVTWPLVYLASKSPTLAKPAYNGLGAVQQVARERRAAAHVSTGQG

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=349, Percent_Identity=26.9340974212034, Blast_Score=117, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 63095; Mature: 62964

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSSVPVHPARYLSVFLLLLVGVYLLVFLTGDKRAAPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCC
APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLIITVPGNDGNEARNLGQTARLYIRP
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
VLNSMPAQSGEPKPAPRQPAQPAPGQPAPGQPAPAPGQPAPAPGQPAPGQPVPAPAQPGA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAQPRPYPQDPPPSPSPAPAPAPAPGPAPAPAPAPSPGEAPPGEQPAPPDPRKDLAERI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHKVAYLLGPSII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC
SGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAHIGTQTAFTLDSQVVSAPMIQ
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHH
EAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQSSEAQTVSATLGLTSLRAGLI
HHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHH
AGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTLDLAGIAGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAI
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
GQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAKPAYNGLGAVQQVARERRAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVSTGQG
CCCCCCC
>Mature Secondary Structure 
ASSSVPVHPARYLSVFLLLLVGVYLLVFLTGDKRAAPKLGIDLQGGTRVTLTARTPDGS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEECCCCC
APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLIITVPGNDGNEARNLGQTARLYIRP
CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHH
VLNSMPAQSGEPKPAPRQPAQPAPGQPAPGQPAPAPGQPAPAPGQPAPGQPVPAPAQPGA
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
APAQPRPYPQDPPPSPSPAPAPAPAPGPAPAPAPAPSPGEAPPGEQPAPPDPRKDLAERI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
AEEKKWRQSTRQGIQFLALQFQATRCDKDDILAGNDDPAQPLITCSTDHKVAYLLGPSII
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCC
SGDQIKDASASQNQRGIGFVVDLQFKPAAANTWADFTAAHIGTQTAFTLDSQVVSAPMIQ
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHH
EAIPGGRTQISGGDPPFTAATAKQLANVLKYGSLPLSFQSSEAQTVSATLGLTSLRAGLI
HHCCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHH
AGAIGLLLVLLYSLLYYRVLGLLTALSLAASGAMVFAILILLGRYINYTLDLAGIAGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIGTTADSFVVFFERIKDEIREGRTFRSAVPRGWTRARKTIVSGNAVTFLAAAVLYFLAI
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
GQVKGFAFTLGLTTILDLVVVFLVTWPLVYLASKSPTLAKPAYNGLGAVQQVARERRAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVSTGQG
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11234002 [H]