| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41407065
Identifier: 41407065
GI number: 41407065
Start: 1002714
End: 1003934
Strand: Direct
Name: 41407065
Synonym: MAP0967
Alternate gene names: NA
Gene position: 1002714-1003934 (Clockwise)
Preceding gene: 41407058
Following gene: 41407066
Centisome position: 20.76
GC content: 67.16
Gene sequence:
>1221_bases ATGACGGTTACGGAGGTGGTTGTGGCACAACCTGTCTGGGCGGGCGTGGACGCCGGTAAGGCCGACCATTACTGCATGGT TATTAACGACGACGCGCAGCGATTGCTCTCGCAGCGGGTGGCCAACGACGAGGCCGCGCTGCTGGAGTTGATTGCGGCGG TGACGACGTTGGCCGATGGAGGCGAGGTCACGTGGGCGATCGACCTCAACGCCGGCGGCGCCGCGTTGCTGATCGCCTTG CTCATCGCTGCCGGGCAGCGGCTGCTTTATATTCCCGGGCGCACGGTCCATCACGCCGCGGGTAGTTACCGCGGCGAAGG CAAGACCGACGCCAAAGACGCTGCGATCATCGCCGATCAGGCCCGGATGCGCCACGACTTGCAGCCTCTGCGCGCCGGCG ATGACATCGCAGTCGAGCTGCGCATCCTGACCAGCCGACGTTCCGATCTGGTGGCTGATCGGACCCGGGCGATCAACCGA ATGCGCGCCCAGCTGCTGGAATACTTTCCGGCGCTGGAACGCGCCTTCGACTACAACAAGAGCCGTGCCGCGCTGATCCT GCTTACTGGCTACCAAACTCCCGACGCGCTGCGCAGCGCCGGTGGCGCTCGAGTAGCCGCGTTCTTGCGTAAACGCAAGG CCCGCAACGCCGATACCGTCGCAGCCACCGCGCTGCAGGCCGCTAACGCCCAACACAGCATCGTGCCCGGCCAACAACTG GCGGCCACTGTGGTGGCCCGCCTGGCCAAGGAGGTGATGGCCCTCGACACCGAAATCGGCGACACCGACGCGATGATCGA GGAGCGATTTCGCCGCCACCGCCACGCCGAAATCATCCTGAGCATGCCCGGATTCGGCGTCATCCTGGGCGCTGAGTTCC TCGCCGCCACCGGCGGGGACATGGCCGCATTCGCCTCCGCCGACCGCCTCGCCGGCGTCGCCGGCCTGGCGCCGGTACCA CGAGATTCCGGCCGCATCAGCGGAAACCTCAAACGCCCCCGACGCTACGACCGGCGCCTGCTGCGCGCCTGCTACCTGTC GGCCTTGGTCAGCATCCGCACCGACCCCTCCTCGCGCACCTACTACGACCGAAAACGCACCGAAGGAAAACGCCACACCC AAGCCGTCCTCGCCCTGGCCCGCCGCCGCCTCAACGTCCTGTGGGCCATGCTGCGCGACCACGCTGTCTACCACCCCGCA ACCACTACCGCGGCGGCTTGA
Upstream 100 bases:
>100_bases GCCCGGCGTCCCGCGACGACTCGACCGCTAATTGAGAGATGCGATTGGATCGCTGTGTAAGGACACGTCGGCGTGGTCGT CTGCTGGGTTGATCTGGACA
Downstream 100 bases:
>100_bases CAACGTCATTGAGAATCCCCTTACGCGGAAAAGACGACCGAGACGTTGTTTAGCCCGTCTGCAAACTGACCATCGTACAA TAGCGTACAAAACATACTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADGGEVTWAIDLNAGGAALLIAL LIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINR MRAQLLEYFPALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQL AATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVP RDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPA TTTAAA
Sequences:
>Translated_406_residues MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADGGEVTWAIDLNAGGAALLIAL LIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINR MRAQLLEYFPALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQL AATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVP RDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPA TTTAAA >Mature_405_residues TVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADGGEVTWAIDLNAGGAALLIALL IAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINRM RAQLLEYFPALERAFDYNKSRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQLA ATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGDMAAFASADRLAGVAGLAPVPR DSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRTYYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPAT TTAAA
Specific function: Unknown
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 44025; Mature: 43894
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADG CCHHHHHHHCCHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC GEVTWAIDLNAGGAALLIALLIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQ CEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHH ARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINRMRAQLLEYFPALERAFDYNK HHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQL CCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHH AATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC MAAFASADRLAGVAGLAPVPRDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRT HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC YYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPATTTAAA CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCC >Mature Secondary Structure TVTEVVVAQPVWAGVDAGKADHYCMVINDDAQRLLSQRVANDEAALLELIAAVTTLADG CHHHHHHHCCHHCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC GEVTWAIDLNAGGAALLIALLIAAGQRLLYIPGRTVHHAAGSYRGEGKTDAKDAAIIADQ CEEEEEEEECCCHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHHH ARMRHDLQPLRAGDDIAVELRILTSRRSDLVADRTRAINRMRAQLLEYFPALERAFDYNK HHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC SRAALILLTGYQTPDALRSAGGARVAAFLRKRKARNADTVAATALQAANAQHSIVPGQQL CCEEEEEEECCCCHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHH AATVVARLAKEVMALDTEIGDTDAMIEERFRRHRHAEIILSMPGFGVILGAEFLAATGGD HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCC MAAFASADRLAGVAGLAPVPRDSGRISGNLKRPRRYDRRLLRACYLSALVSIRTDPSSRT HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC YYDRKRTEGKRHTQAVLALARRRLNVLWAMLRDHAVYHPATTTAAA CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2555783 [H]