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The map label for this gene is 41407054

Identifier: 41407054

GI number: 41407054

Start: 989744

End: 991426

Strand: Direct

Name: 41407054

Synonym: MAP0956

Alternate gene names: NA

Gene position: 989744-991426 (Clockwise)

Preceding gene: 41407053

Following gene: 41407057

Centisome position: 20.49

GC content: 69.58

Gene sequence:

>1683_bases
ATGATCCGCGGCGCGCGGGACTTCACCCCCGGCATGACCATCACCACCGACGTGGCGGTCGTCGGGTCCGGCCCGATCGG
CATCGTGACCGCGCTGGAACTCGCCGCCTCGGGTGTGCAGGTGGTGCTGATCGAAAGCGGTGCGCAGCGCCCGGACCGCG
CGGCGCAGCAACTGGCCGAATTCGATTCGCGGCACGACGACTATTTCCATTCGCGCAGCGGGCTGACGGTGCGCCGGCAG
GTGGGAGGAACCTCGGCGCTGTGGGGTGGGCGCTGCGTCAAGTTCGACCGCATCGACTTCGAGCACCGGCTTATCACCGA
ACAGGCGCCGTGGCCGATCGGATACGACGACGTCGAGCCGTACCTGCAGCGGGCCTGCGACTGGGCGGCCTGCGGCCGGG
CGGTGTTCAACGCCCGCGACATCCCCGAACTCGCGCACCGGGACCTGGTCGCCGGGCTGCCCGACGGCGCCGTCCGCAGC
ACCGACCTGGAGCGCTGGGCGCTGCCCACCCGGTTCGGCCGGCATTATCGAAAAGCGTTGCGGCGCACCGCCGGACTGAC
GCTGTGGACCGGACTCACCTGCACCGAGATCGTGACCGAGCCGGCCGGCGGCCGCGTCGATCACCTGGTGGTCAAGACGT
TGCCCGGCGCCCAGGGCAAGGTGGTCGCCACCGACTACGTCATCGCGACCGGCGGTTTGGAGGCCACCCGGCTGCTGCTG
GCCTCCGACCGTTATCACCCCGGCGGGCTGGGCAACACGGGCGGACACCTGGGCCGCTGGTACATGGCCCACGTCGAAGG
ACGGGTCGCGCGGGTGCAATTCAGCACCGACCGGGTGATCCACGGATATGAACGCGACGGCGACGGCGTGTATGTGCGGC
GCCGCTTCACCTTCGACCCGGGCCTGCTGCGCGAAGCCGGAATGTCCAATGCCGCAATATGGTTGGTGAATCCCCCGATC
AGCGACCCGAGTCATGGCAGCGGCATCCTGTCCGGGGTGTATCTGACGCTGATCTCCCCGCTCGGCCGGTTCTTGCTGGC
GGCAGCGATCCGCGAGGCGCACACCAAGACGGACGGCCCGCCGCGGATACTGGCGCATCTGCGCAACATTGCGGCGGATC
TGCCCGGCTCGATCGGGTTCGCGGTCGCGTTCTGCTACGCCCGGTTCGTCCGGCGGGGCAGGAAGGCGCCGGGCTTCTTC
GTGCGCAGCGCCGACAACCGGTACCTGCTGCAGTACCACGGCGAGCATCTTCCGCACTGGGAGAGCCGGGTCGAACTGTC
GGACGAACGAGATAGCTTGGGCATGAAGCGGATTCGCACCCGCATGCATTTCTCCGACGCCGACTACGCCAGCGTGCGCA
CGGCGATCGGTGTAATCGACGAACACCTGCGCCGCCACGGGGCGGGACGGGTGGAGTGGTTGACCGACGACGTCGAGGCC
TCGGTGCGCGGCTACATGCGGCGGCGGGCCGGTTTCCACCAGGCCGGAACCACCCGGATGTCGGCGTCGCCGAAAGACGG
TGTGGTGGATCCCCAGCTGCAGGTGCACGGGGTGCGTGGGCTCTACGTCGCCGCCACCTCGGTGCTGCCGACGTCCAGCC
AGGCCAACCCCACGCTGCTCGGGATCGCGCTCGGCGTCCGGCTGGCCGAGCATCTTGCGGCCTCGCGCGCCTACCCGGGC
TAA

Upstream 100 bases:

>100_bases
CGCGGGTGGCCGAGGCGGCGGCCGCCGTCGCCGCCCCGGACGCCGAGACCGTCGCGCGGTTCCTCGCCCTGGTCACCGAG
TTCCGCGGGGGGCGGGCCGG

Downstream 100 bases:

>100_bases
GGGGCGGTCAATTCGTCGATCGGGCCGACACCGGCCAGAACTCGTCGATCAGCGACTTCGTCTGCCGGATGTTCGCCCCG
CTGGACGCGCCGAACACGAT

Product: hypothetical protein

Products: NA

Alternate protein names: FAD Dependent Oxidoreductase; Oxidoreductase; NAD-Dependent Epimerase/Dehydratase; GMC Oxidoreductase Family; Glucose-Methanol-Choline Oxidoreductase; Choline Dehydrogenase-Like Flavoprotein; Choline Dehydrogenase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; Gluconate Dehydrogenase; FAD-Dependent Oxidoreductase; Capsular Polysaccharide Biosynthesis Oxidoreductase; Dehydrogenase Subunit I; GMC Family Oxidoreductase

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MIRGARDFTPGMTITTDVAVVGSGPIGIVTALELAASGVQVVLIESGAQRPDRAAQQLAEFDSRHDDYFHSRSGLTVRRQ
VGGTSALWGGRCVKFDRIDFEHRLITEQAPWPIGYDDVEPYLQRACDWAACGRAVFNARDIPELAHRDLVAGLPDGAVRS
TDLERWALPTRFGRHYRKALRRTAGLTLWTGLTCTEIVTEPAGGRVDHLVVKTLPGAQGKVVATDYVIATGGLEATRLLL
ASDRYHPGGLGNTGGHLGRWYMAHVEGRVARVQFSTDRVIHGYERDGDGVYVRRRFTFDPGLLREAGMSNAAIWLVNPPI
SDPSHGSGILSGVYLTLISPLGRFLLAAAIREAHTKTDGPPRILAHLRNIAADLPGSIGFAVAFCYARFVRRGRKAPGFF
VRSADNRYLLQYHGEHLPHWESRVELSDERDSLGMKRIRTRMHFSDADYASVRTAIGVIDEHLRRHGAGRVEWLTDDVEA
SVRGYMRRRAGFHQAGTTRMSASPKDGVVDPQLQVHGVRGLYVAATSVLPTSSQANPTLLGIALGVRLAEHLAASRAYPG

Sequences:

>Translated_560_residues
MIRGARDFTPGMTITTDVAVVGSGPIGIVTALELAASGVQVVLIESGAQRPDRAAQQLAEFDSRHDDYFHSRSGLTVRRQ
VGGTSALWGGRCVKFDRIDFEHRLITEQAPWPIGYDDVEPYLQRACDWAACGRAVFNARDIPELAHRDLVAGLPDGAVRS
TDLERWALPTRFGRHYRKALRRTAGLTLWTGLTCTEIVTEPAGGRVDHLVVKTLPGAQGKVVATDYVIATGGLEATRLLL
ASDRYHPGGLGNTGGHLGRWYMAHVEGRVARVQFSTDRVIHGYERDGDGVYVRRRFTFDPGLLREAGMSNAAIWLVNPPI
SDPSHGSGILSGVYLTLISPLGRFLLAAAIREAHTKTDGPPRILAHLRNIAADLPGSIGFAVAFCYARFVRRGRKAPGFF
VRSADNRYLLQYHGEHLPHWESRVELSDERDSLGMKRIRTRMHFSDADYASVRTAIGVIDEHLRRHGAGRVEWLTDDVEA
SVRGYMRRRAGFHQAGTTRMSASPKDGVVDPQLQVHGVRGLYVAATSVLPTSSQANPTLLGIALGVRLAEHLAASRAYPG
>Mature_560_residues
MIRGARDFTPGMTITTDVAVVGSGPIGIVTALELAASGVQVVLIESGAQRPDRAAQQLAEFDSRHDDYFHSRSGLTVRRQ
VGGTSALWGGRCVKFDRIDFEHRLITEQAPWPIGYDDVEPYLQRACDWAACGRAVFNARDIPELAHRDLVAGLPDGAVRS
TDLERWALPTRFGRHYRKALRRTAGLTLWTGLTCTEIVTEPAGGRVDHLVVKTLPGAQGKVVATDYVIATGGLEATRLLL
ASDRYHPGGLGNTGGHLGRWYMAHVEGRVARVQFSTDRVIHGYERDGDGVYVRRRFTFDPGLLREAGMSNAAIWLVNPPI
SDPSHGSGILSGVYLTLISPLGRFLLAAAIREAHTKTDGPPRILAHLRNIAADLPGSIGFAVAFCYARFVRRGRKAPGFF
VRSADNRYLLQYHGEHLPHWESRVELSDERDSLGMKRIRTRMHFSDADYASVRTAIGVIDEHLRRHGAGRVEWLTDDVEA
SVRGYMRRRAGFHQAGTTRMSASPKDGVVDPQLQVHGVRGLYVAATSVLPTSSQANPTLLGIALGVRLAEHLAASRAYPG

Specific function: Unknown

COG id: COG2303

COG function: function code E; Choline dehydrogenase and related flavoproteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61335; Mature: 61335

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRGARDFTPGMTITTDVAVVGSGPIGIVTALELAASGVQVVLIESGAQRPDRAAQQLAE
CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
FDSRHDDYFHSRSGLTVRRQVGGTSALWGGRCVKFDRIDFEHRLITEQAPWPIGYDDVEP
HHCCCCHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCHHHH
YLQRACDWAACGRAVFNARDIPELAHRDLVAGLPDGAVRSTDLERWALPTRFGRHYRKAL
HHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
RRTAGLTLWTGLTCTEIVTEPAGGRVDHLVVKTLPGAQGKVVATDYVIATGGLEATRLLL
HHHCCCEEECCCCHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHH
ASDRYHPGGLGNTGGHLGRWYMAHVEGRVARVQFSTDRVIHGYERDGDGVYVRRRFTFDP
CCCCCCCCCCCCCCCCHHHHHHEEECCEEEEEEECCCCEEECEEECCCCEEEEEEECCCC
GLLREAGMSNAAIWLVNPPISDPSHGSGILSGVYLTLISPLGRFLLAAAIREAHTKTDGP
HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PRILAHLRNIAADLPGSIGFAVAFCYARFVRRGRKAPGFFVRSADNRYLLQYHGEHLPHW
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCC
ESRVELSDERDSLGMKRIRTRMHFSDADYASVRTAIGVIDEHLRRHGAGRVEWLTDDVEA
HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH
SVRGYMRRRAGFHQAGTTRMSASPKDGVVDPQLQVHGVRGLYVAATSVLPTSSQANPTLL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCEEE
GIALGVRLAEHLAASRAYPG
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIRGARDFTPGMTITTDVAVVGSGPIGIVTALELAASGVQVVLIESGAQRPDRAAQQLAE
CCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH
FDSRHDDYFHSRSGLTVRRQVGGTSALWGGRCVKFDRIDFEHRLITEQAPWPIGYDDVEP
HHCCCCHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCCCCCHHHH
YLQRACDWAACGRAVFNARDIPELAHRDLVAGLPDGAVRSTDLERWALPTRFGRHYRKAL
HHHHHCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
RRTAGLTLWTGLTCTEIVTEPAGGRVDHLVVKTLPGAQGKVVATDYVIATGGLEATRLLL
HHHCCCEEECCCCHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHH
ASDRYHPGGLGNTGGHLGRWYMAHVEGRVARVQFSTDRVIHGYERDGDGVYVRRRFTFDP
CCCCCCCCCCCCCCCCHHHHHHEEECCEEEEEEECCCCEEECEEECCCCEEEEEEECCCC
GLLREAGMSNAAIWLVNPPISDPSHGSGILSGVYLTLISPLGRFLLAAAIREAHTKTDGP
HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PRILAHLRNIAADLPGSIGFAVAFCYARFVRRGRKAPGFFVRSADNRYLLQYHGEHLPHW
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCEEEEEECCCCCCCC
ESRVELSDERDSLGMKRIRTRMHFSDADYASVRTAIGVIDEHLRRHGAGRVEWLTDDVEA
HHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHH
SVRGYMRRRAGFHQAGTTRMSASPKDGVVDPQLQVHGVRGLYVAATSVLPTSSQANPTLL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCEEE
GIALGVRLAEHLAASRAYPG
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA