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The map label for this gene is ihfA

Identifier: 52842915

GI number: 52842915

Start: 3060361

End: 3060660

Strand: Reverse

Name: ihfA

Synonym: lpg2709

Alternate gene names: 52842915

Gene position: 3060660-3060361 (Counterclockwise)

Preceding gene: 52842916

Following gene: 52842914

Centisome position: 90.08

GC content: 35.33

Gene sequence:

>300_bases
ATGATCGTGAACGCACTAAGCAAAGCAATAATGGCAGAAACGTTGTGTGACGAATTAAAATTAAATAAACCAGTTGCTAA
AGAAATGGTTGAAAATTTTTTTGAAGAATTACGCCATGCTCTTGAAAATGGTCAGCATGTGAAATTATCCGGTTTTGGTA
ATTTTACTTTGAGAGATAAACCACAAAGGCCAGGCCGCAATCCAAAAACAGGTGAAGAAATTCCTGTGGAAGCCAGAAGG
GTTGTTACCTTTAAGCCAGGTTTAAAATTAAAAACGAAAATTGAAAAAATAGGAAAGTAG

Upstream 100 bases:

>100_bases
TACAAGACGATACTCGAACTTTAGTTGATGCCGAGATCAATTTAACAATTAGTGCTATAATCAAGAAACTGGAAAATGAA
TTTTCAATCCTTTTGAGGGA

Downstream 100 bases:

>100_bases
TTTGTTGTCTCATTACACCAAGCATGTATTCATATGCACAAATCAGAAAGCACCGGGTAAGCAATGTTGTGCTAATTCCG
GTGGAGAAGAATTTTTTGAT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRPGRNPKTGEEIPVEARR
VVTFKPGLKLKTKIEKIGK

Sequences:

>Translated_99_residues
MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRPGRNPKTGEEIPVEARR
VVTFKPGLKLKTKIEKIGK
>Mature_99_residues
MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRPGRNPKTGEEIPVEARR
VVTFKPGLKLKTKIEKIGK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=91, Percent_Identity=71.4285714285714, Blast_Score=134, Evalue=2e-33,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=32.5842696629214, Blast_Score=60, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_LEGPH (Q5ZS10)

Other databases:

- EMBL:   AE017354
- RefSeq:   YP_096714.1
- HSSP:   P0A6X7
- ProteinModelPortal:   Q5ZS10
- SMR:   Q5ZS10
- STRING:   Q5ZS10
- GeneID:   3079171
- GenomeReviews:   AE017354_GR
- KEGG:   lpn:lpg2709
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   RPKVTKS
- ProtClustDB:   PRK00285
- BioCyc:   LPNE272624:LPG2709-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 11199; Mature: 11199

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PQRPGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEKIGK
CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MIVNALSKAIMAETLCDELKLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDK
CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
PQRPGRNPKTGEEIPVEARRVVTFKPGLKLKTKIEKIGK
CCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA