| Definition | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 chromosome, complete genome. |
|---|---|
| Accession | NC_002942 |
| Length | 3,397,754 |
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The map label for this gene is hss
Identifier: 52842703
GI number: 52842703
Start: 2811945
End: 2813363
Strand: Reverse
Name: hss
Synonym: lpg2495
Alternate gene names: 52842703
Gene position: 2813363-2811945 (Counterclockwise)
Preceding gene: 52842705
Following gene: 52842699
Centisome position: 82.8
GC content: 38.9
Gene sequence:
>1419_bases ATGGATAAGAATCATAATACAAAAAAAATCTTGTTTAAAAATCGTTTTGTCATATTAGGATTTGGTTGCGTTGGTCAGGC ATTAATGCCTTTAATCTTTGAGAAATTTGATATCAAACCATCGCAAGTGACAATCATTGCCGCAGAAGGGACAAAGGTCG ATGTTGCTCAACAATACGGAGTTTCATTCAAGTTACAACAAATTACTCCCCAAAATTATCTTGAAGTGATTGGTAGTACT TTGGAAGAAAACGATTTTTTAATTGATGTGTCAATCGGTATATCAAGTCTTGCTTTGATTATACTATGTAATCAAAAAGG AGCATTGTATATTAATGCTGCAACTGAGCCGTGGAAAGAAGAATTTGTTATGGAGAAGATGGCGCTTAATCGCCGAACCA ATTATTCTTTGCGTGAAGAAGTCCTTCGCTTAAAGGATAAAACTCAAAAAACAGCCTTAATTACTCACGGGGCTAATCCG GGTCTTGTTTCACATTTTATTAAAGAGGCCTTGTTGAATATTGCAAAAGATAATGGCCTTACTATTAACAGACCTAAAAA TGCAGCAGAATGGGCTAATCTCGCCATGACTTTGGGAATTAAAGTAATCCATGTTGCAGAGCAAGACTCTCAAGTTACCT ATCCTCCAAAATCACCAGGCGAGTTCGTTAATACCTGGTCCGCTAATGGTCTGATTTTGGAAGGACTGCAACCTGCTGAA ATCGGGTGGGGGACACATGAAGCTCATTGGCCCCATGACGCTTATTCTCATAGTAATGGACCACAATGCGCGATCTATCT GTCTCGCCCTAGTGCCGGTGTAATGGTGCGTTCATGGACGCCAACACTGGGTGCTTTTCACGGTTTTTTAATTACTCATG CAGAAACTATTTCACTTACCAATTTTTTAACATTAAAAAATGGATCTGAATTATTGTATAGGCCAACAGTTCACTACGCC TATAATCCTTGTCCAGATGCCAGGCTCTCCATTTTCGAATTAAAAAGTAATGAATGGAAACCACAAAACAAGAATCGCCT GATTTTAAACGAAATCATTGATGGATGTGATGAATTGGGTGTGTTGTTGATGGGTAATCAAAGAGGGGCGTATTGGTATG GTTCAACTCTTTCTATCCAGGAAGCAAGGCAAATTGCCCCTTATAATAATGCAACCAGTTTACAAGTTGTCGCCAGTATG ATTTCAGGAATAATCTGGGCAATAGAGCATCCTGATGAGGGTATCGTAGAACCAGAGGAAGTTGATCACCAATATATTAT TGATATTGCCAAACCGTATCTTGGAAAAGTCGGCGGCTATTACACGGATTGGACCCCTTTAAAAAATAGAGGGGAACTTT ATCCTGAAGAAGTGGACTTATCTGATCCCTGGCAATTTTTCAATATAAGGGTTAATTAA
Upstream 100 bases:
>100_bases ATATGAAAGTTTTTGATGTCTGTTGGGTATGATCATTGTTGAATAGTTGTTGAGTATTAAAAATTCAAATTAAACTGGGC CGGGAAGTTAAGGATTCATC
Downstream 100 bases:
>100_bases AAGGAGTAACGTATTGTAATAATTAGTATTAATCAATGAACTATGCATTATCATACCAGTCCAATCAATTGGACTGGTGA CTCCGTAGCATTGATTATTT
Product: homospermidine synthase
Products: NA
Alternate protein names: HSS [H]
Number of amino acids: Translated: 472; Mature: 472
Protein sequence:
>472_residues MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST LEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANP GLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAE IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYA YNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASM ISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN
Sequences:
>Translated_472_residues MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST LEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANP GLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAE IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYA YNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASM ISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN >Mature_472_residues MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGST LEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANP GLVSHFIKEALLNIAKDNGLTINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAE IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLTNFLTLKNGSELLYRPTVHYA YNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELGVLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASM ISGIIWAIEHPDEGIVEPEEVDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN
Specific function: Involved in the NAD(+)-dependent synthesis of the polyamine homospermidine from putrescine [H]
COG id: COG5310
COG function: function code Q; Homospermidine synthase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023181 - InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: =2.5.1.44 [H]
Molecular weight: Translated: 52928; Mature: 52928
Theoretical pI: Translated: 6.06; Mature: 6.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG CCCCCCCEEEEEECCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHCC VSFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKE CEEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCHHH EFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGL HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE TINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAE EEECCCCHHHHHHHHEEECEEEEEEECCCCEEECCCCCCCCHHCCCCCCCEEEECCCCCC IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLT CCCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHEEEEEEEEEE NFLTLKNGSELLYRPTVHYAYNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELG EEEEECCCCCEEEECEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHCCHHHCC VLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASMISGIIWAIEHPDEGIVEPEE EEEECCCCCCEEECCEEEHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHH VDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN CCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure MDKNHNTKKILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG CCCCCCCEEEEEECCEEEEEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHCC VSFKLQQITPQNYLEVIGSTLEENDFLIDVSIGISSLALIILCNQKGALYINAATEPWKE CEEEEEECCHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCCCHHH EFVMEKMALNRRTNYSLREEVLRLKDKTQKTALITHGANPGLVSHFIKEALLNIAKDNGL HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE TINRPKNAAEWANLAMTLGIKVIHVAEQDSQVTYPPKSPGEFVNTWSANGLILEGLQPAE EEECCCCHHHHHHHHEEECEEEEEEECCCCEEECCCCCCCCHHCCCCCCCEEEECCCCCC IGWGTHEAHWPHDAYSHSNGPQCAIYLSRPSAGVMVRSWTPTLGAFHGFLITHAETISLT CCCCCCCCCCCCHHCCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHEEEEEEEEEE NFLTLKNGSELLYRPTVHYAYNPCPDARLSIFELKSNEWKPQNKNRLILNEIIDGCDELG EEEEECCCCCEEEECEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHCCHHHCC VLLMGNQRGAYWYGSTLSIQEARQIAPYNNATSLQVVASMISGIIWAIEHPDEGIVEPEE EEEECCCCCCEEECCEEEHHHHHHCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCHHH VDHQYIIDIAKPYLGKVGGYYTDWTPLKNRGELYPEEVDLSDPWQFFNIRVN CCCEEEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]