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The map label for this gene is 52842699

Identifier: 52842699

GI number: 52842699

Start: 2808266

End: 2808829

Strand: Reverse

Name: 52842699

Synonym: lpg2491

Alternate gene names: NA

Gene position: 2808829-2808266 (Counterclockwise)

Preceding gene: 52842703

Following gene: 52842696

Centisome position: 82.67

GC content: 37.77

Gene sequence:

>564_bases
ATGAACGCTATACGTGCTTTTTTTGCTATTTCACTACCACCAGCGATCCAGGAAAATATCCGGAGTAATTTGGAGCCATT
GAGGCAAATGGCACCAGTTCACTCCATAAGGTGGACAAAGCCAATGCATTTGCATATCACCTTGCAATTTTTACAGAGAC
TGGAAACAAAACATATTCAGGTCTTGATTGAAAGAGTAAGTAATGAACTTAACCATATAAAGCAATTTGATTTGGAATTC
GGTGTTTTAGAGTGGTTCCCTTCTCCCAAAAATCCAAGACTTATTTCATTAACTGTAGATCCTCAAGACAGACTTAGGGA
TTGGTCTCGAATGATTGGTCAGGTGATGGACAGTTTAAAGTATCCCTTAGAAAAACGTCCTTTTAGAGGGCATTTGACTG
TAGGTAGAGTGGTGAATTTCAGCCCAAAACTTCAGCAGTTGTTGCAAATAAAATTTCCTATCATTCCACCAGTTCCGATT
AATAAATTTTATTTAATCGAAAGTAGGCCCGATAAAGAAGGAAGTAATTATTTTCCCTTGGCACAATTTGATTTAACCCG
GTAA

Upstream 100 bases:

>100_bases
TAAAAACAGTAGTGATCTTGATAATTAATTTGGAAAAAGCGTTTGTTTTTCGGAATTTATTTTGTGGATTGCAATATTTT
TCCAATAGGCAACTCATATT

Downstream 100 bases:

>100_bases
AAGAGAATGGCTGATTTGCCAATTGGAACGATTCTTTGCCTCTGTGTCCAACTTATTATGCTCAAGTGTCTTTATTATTG
GCATAGGATGAATTTAAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: 2 5' RNA Ligase Family Protein; 2 5' RNA Ligase; 2-5' RNA Ligase Family Protein; 2 -5 RNA Ligase

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHLHITLQFLQRLETKHIQVLIERVSNELNHIKQFDLEF
GVLEWFPSPKNPRLISLTVDPQDRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR

Sequences:

>Translated_187_residues
MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHLHITLQFLQRLETKHIQVLIERVSNELNHIKQFDLEF
GVLEWFPSPKNPRLISLTVDPQDRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR
>Mature_187_residues
MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHLHITLQFLQRLETKHIQVLIERVSNELNHIKQFDLEF
GVLEWFPSPKNPRLISLTVDPQDRLRDWSRMIGQVMDSLKYPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPI
NKFYLIESRPDKEGSNYFPLAQFDLTR

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22026; Mature: 22026

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHLHITLQFLQRLETKHIQ
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEHHHHHHHHHHHHHH
VLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLTVDPQDRLRDWSRMIGQVMDSLK
HHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
YPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPINKFYLIESRPDKEGSNYFPL
CCHHCCCCCCCEEECCEECCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
AQFDLTR
CCCCCCC
>Mature Secondary Structure
MNAIRAFFAISLPPAIQENIRSNLEPLRQMAPVHSIRWTKPMHLHITLQFLQRLETKHIQ
CCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEHHHHHHHHHHHHHH
VLIERVSNELNHIKQFDLEFGVLEWFPSPKNPRLISLTVDPQDRLRDWSRMIGQVMDSLK
HHHHHHHHHHHHHHHHCCCHHHHEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHC
YPLEKRPFRGHLTVGRVVNFSPKLQQLLQIKFPIIPPVPINKFYLIESRPDKEGSNYFPL
CCHHCCCCCCCEEECCEECCCHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCC
AQFDLTR
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA