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The map label for this gene is kaiC2

Identifier: 52841349

GI number: 52841349

Start: 1221312

End: 1222988

Strand: Reverse

Name: kaiC2

Synonym: lpg1115

Alternate gene names: NA

Gene position: 1222988-1221312 (Counterclockwise)

Preceding gene: 52841351

Following gene: 52841348

Centisome position: 35.99

GC content: 36.97

Gene sequence:

>1677_bases
ATGCATCTGTTGAGAGGACGAAATGTGAATACCAATAAAGCAAAAACGGGAATTAAGGGGTTAGATGATATTTTAAATGG
TGGTTATTTAAAAAATAAACCAACCCTTCTCAAAGGCAGCCCTGGTACAGGAAAAACAATATTTACCCTTTTTTTTACGC
ATGAACAACTTAAGTCAAACAACAGCGTCATTTATGTCACCTGCGATGAGTCACCTGAGCAAATTATTGCTCATATGGAT
GGCTTTAACCTGGAAAGCAGCAAATTTTTACAAGAAGGCAAGCTTTTAATTCTTGACTTCACACCTATATTAACGGACGA
AGTGGCCGGGGAATTCAATATCAATGCACTTTTACTCCGTATAGAACAGGCTCAACAGAAAATCAAAGCCGATACACTAA
TTATTGATTCACTTCAGTCCATTCTTTTAGGCATCAAAAATTATGATCCCAACTACGAGTTGTTAAGATTATTTCAGTGG
GCGCGGCAAAAAAATCTTACCGTTCTCACAACGATGGCTGAAACCCAAACGATTTTACAAACAGAAATCTATGACGAATA
TGTTGTTGATTGTGCTATTGAGCTAAAACAAAAAGTCAAGAACGACCTGATGACGCGCTATTTGCGAATCATTAAAAATC
GTGGTTCGTCTCATGGCACTAATGAGTATCCCTTTTCTATTACTCATAATGGCATTTCATTACTTCCCATCACTAGCACA
AAACTGAATACAACAACTTCTGCTGCATATCTCAGCACTGGTATAAAAGCCTTGGATAGTATGCTAGGCAGTAAAGGATA
CCAAACAGGATCGCAGATAATAATCAGCGGACGTTCAGGAACAGCAAAAACGCTTTTTGCAACAAGTTTCGCCCAATCCG
CTGTTCGACAAGGCAGGAAAGTGCTGTTCATCTCATTTGAAGAATCCCCTAATGATTTAATCCGTCATGTCAAGTCCATT
AATATTGATTTAATGAAATATATCACCAAAAAAAAATTACATATTAATTCAAGACGCTCTGTGGAAATGGGACTGGAAGA
CCATATTATTTCAATCATCGAATTAACAGAAGAAAAGCAATTTGATGTCCTGATACTGGATCCCATCTCAGCTCTGCTGG
ATTTAGGTAATACGATGGAAGTCAAGAGACTGTTCATACGTTTTATTTCTTATATGAAATCTCTCAATAAAACCCTTTTA
TTTACTGAACTGATACCCGATTATTCCAAAGAGCTAACCATACTGGGCTTATCCAGCTTAACAGAAACCTGGATTCGCTT
ATCTAATGTGGAAAGTAATGGAGAATTCAATCGATTAATCCACATTGCCAAGGCGCGTGGCATAAAAACATCCAACCAAA
TCAAAGAATTTTATGTCACTGATAAAGGGATTAACATAGAAGCCCCTTATCTTGGTGATAACCAGATGATGTTTGGTTCT
CAAAAATCAGCCCACATCTTGAGAGAAAAACAAGAATTACAACAGAGGAAAGAAGAAATTAAACGGATTGAGCTTGAAAT
TGATAAGCTTGCAGAAACACAACGTGCTCAACTCAAGATTCAAGAGGCAACCTTTTTAGCTAAAAGGACTGAATTGATTG
CTAAAAAAAATGAATTGATTGCTAAAGAAGAAGCGCTTATTAAACGCATGGAGTCCAACAAATTGTTAAGAGAGTAA

Upstream 100 bases:

>100_bases
TACGACAAAATTTGTTACGACTCTATCAAGACGAAATATTAGAACTATAATTAAACAATCAGAATATTATTTATCGCTTC
AACAGTGGTATTTTACAGAT

Downstream 100 bases:

>100_bases
ATGAATGACTCGAACTAAGCTAAAACTGTTTGTGATTGGAAATAGTGCTATATCAAAACGTGCCATTATTAATTTGCAAT
CGATATGCTCAGATCCCAAG

Product: circadian clock protein KaiC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 558; Mature: 558

Protein sequence:

>558_residues
MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSNNSVIYVTCDESPEQIIAHMD
GFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLRIEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQW
ARQKNLTVLTTMAETQTILQTEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYPFSITHNGISLLPITST
KLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRKVLFISFEESPNDLIRHVKSI
NIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISALLDLGNTMEVKRLFIRFISYMKSLNKTLL
FTELIPDYSKELTILGLSSLTETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGS
QKSAHILREKQELQQRKEEIKRIELEIDKLAETQRAQLKIQEATFLAKRTELIAKKNELIAKEEALIKRMESNKLLRE

Sequences:

>Translated_558_residues
MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSNNSVIYVTCDESPEQIIAHMD
GFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLRIEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQW
ARQKNLTVLTTMAETQTILQTEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYPFSITHNGISLLPITST
KLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRKVLFISFEESPNDLIRHVKSI
NIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISALLDLGNTMEVKRLFIRFISYMKSLNKTLL
FTELIPDYSKELTILGLSSLTETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGS
QKSAHILREKQELQQRKEEIKRIELEIDKLAETQRAQLKIQEATFLAKRTELIAKKNELIAKEEALIKRMESNKLLRE
>Mature_558_residues
MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSNNSVIYVTCDESPEQIIAHMD
GFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLRIEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQW
ARQKNLTVLTTMAETQTILQTEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYPFSITHNGISLLPITST
KLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRKVLFISFEESPNDLIRHVKSI
NIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQFDVLILDPISALLDLGNTMEVKRLFIRFISYMKSLNKTLL
FTELIPDYSKELTILGLSSLTETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGS
QKSAHILREKQELQQRKEEIKRIELEIDKLAETQRAQLKIQEATFLAKRTELIAKKNELIAKEEALIKRMESNKLLRE

Specific function: Unknown

COG id: COG0467

COG function: function code T; RecA-superfamily ATPases implicated in signal transduction

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 kaiC domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR010624 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 63388; Mature: 63388

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS51146 KAIC ; PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSN
CCCCCCCCCCCCHHHCCCHHHHHHHCCCEECCCCEEEECCCCCCCEEEEEEEEHHHHCCC
NSVIYVTCDESPEQIIAHMDGFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLR
CCEEEEEECCCHHHHHHHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHCCCCCCHHHEEE
IEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTVLTTMAETQTILQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
TEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYPFSITHNGISLLPITST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCC
KLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
VLFISFEESPNDLIRHVKSINIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQ
EEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCC
FDVLILDPISALLDLGNTMEVKRLFIRFISYMKSLNKTLLFTELIPDYSKELTILGLSSL
CCEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH
TETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGS
HHHHHHHHCCCCCCCHHHHEEHHHHCCCCCHHHHHEEEEECCCCEEECCCCCCCCEEECC
QKSAHILREKQELQQRKEEIKRIELEIDKLAETQRAQLKIQEATFLAKRTELIAKKNELI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHH
AKEEALIKRMESNKLLRE
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHLLRGRNVNTNKAKTGIKGLDDILNGGYLKNKPTLLKGSPGTGKTIFTLFFTHEQLKSN
CCCCCCCCCCCCHHHCCCHHHHHHHCCCEECCCCEEEECCCCCCCEEEEEEEEHHHHCCC
NSVIYVTCDESPEQIIAHMDGFNLESSKFLQEGKLLILDFTPILTDEVAGEFNINALLLR
CCEEEEEECCCHHHHHHHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHCCCCCCHHHEEE
IEQAQQKIKADTLIIDSLQSILLGIKNYDPNYELLRLFQWARQKNLTVLTTMAETQTILQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHH
TEIYDEYVVDCAIELKQKVKNDLMTRYLRIIKNRGSSHGTNEYPFSITHNGISLLPITST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEEECCC
KLNTTTSAAYLSTGIKALDSMLGSKGYQTGSQIIISGRSGTAKTLFATSFAQSAVRQGRK
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
VLFISFEESPNDLIRHVKSINIDLMKYITKKKLHINSRRSVEMGLEDHIISIIELTEEKQ
EEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCC
FDVLILDPISALLDLGNTMEVKRLFIRFISYMKSLNKTLLFTELIPDYSKELTILGLSSL
CCEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHH
TETWIRLSNVESNGEFNRLIHIAKARGIKTSNQIKEFYVTDKGINIEAPYLGDNQMMFGS
HHHHHHHHCCCCCCCHHHHEEHHHHCCCCCHHHHHEEEEECCCCEEECCCCCCCCEEECC
QKSAHILREKQELQQRKEEIKRIELEIDKLAETQRAQLKIQEATFLAKRTELIAKKNELI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHH
AKEEALIKRMESNKLLRE
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]