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The map label for this gene is yciR [C]

Identifier: 52841348

GI number: 52841348

Start: 1218657

End: 1221026

Strand: Reverse

Name: yciR [C]

Synonym: lpg1114

Alternate gene names: 52841348

Gene position: 1221026-1218657 (Counterclockwise)

Preceding gene: 52841349

Following gene: 52841347

Centisome position: 35.94

GC content: 35.36

Gene sequence:

>2370_bases
GTGATATCAAACGAGCATATAAACACACAAAACTTTTGGTACCAACTCGTTGAAAAAATGGCTATTGGGGTATTGGTGAT
TAATAATGAAGGGCAAATTCTTTATGCCAATGATTATGCCGTTCAATTATTTGGCGCCATCCGTACAGAACTCATTGGTA
CTAATTTCTTATATCCTATGGCTGCAGATGAAACACAGGAAGTTGAAATTTTAAAATCCAGTAATGAAATTTTAACAGCA
CATATGACAGTCAGGAAAAGTATCTGGGAAAATCGCCAGGTATGGATTATTTCTCTCTTTGATATTACAGAGCTCAAATT
AAAGGAAAAACTTTTAAAAATTTCAAGTAAGGGTATCAGTTCAGCGTTTGAAGGCATTATTATCACCGATTCGGAAGGCA
CCATTCTTGAAGCGAATCAAGCTTTTATGAAAATGACCGGATATACAGAACAGGAAGTCATAGGCCAAAAACCCGCCATT
TTTCAATCAAGAAAGCAAAATGAGAAATTCTACAAGGAACTATGGAAGATATTGGCTGAAAAAGGACAGTGGAGTGGTGA
GCTTTGGGCTAAAAAGAAAAATAAAAAGTTATTTCCGGCTTTTTTAGCCATCTCATCCGTTAAAAATTCTGAAGGGGACG
TAATAAACTACATTGGTTATTATCATGATCTAACACTAATAAAAAAACAAGAACAACAAATTGAGAATTTTAAATATTAT
GATTATTTAACCGGTTTACCAAATAAATTTTTACTCACCCAAAGACTTCAGATGCTCATCAGCGGATTGTCTGAGGAAAA
TAAAGAACTCATCGTTTTTAATATTCGAGTATTTGACTCAAACAGCAAAAACTCTCTGCTGGATTTTCCTCCCAATATTC
GCGATAAAATCATATTGGAAGTGGTTAACCGTATTGATCGAACATCACCTAAAAAAATGTTTTACTCACGCATTGGTTTA
GGTGAATTTATTGTTATTTATTTTATCAAAAGCAGAATTGAAGTGATGGCTTCCATTGCGCAAAGAATGATAGAAAAACT
CGCTTGTCCTTATTACATTGATCACCAAACTATTATTTTGCAAACGATCATTGGATTAACCGCCTATTACAAAAATAGCG
CATTCAGTGCCGAGGACTTGCTACAACAATCAGAAATTGCCCGCCATAAAGCTCAAATCAACGGTGTTAATATTTTTGAA
TTTTTTGATCCGCAGGTTGAAGAGCGAATTATAGAATTTAATAAACGCATTGAATCAGTCTCTAAAGCAATGCAGCTAAA
TGAACTGAAAGTTTATTACCAACCTATTGTAGAATTAAATACGGCTAAAGTGGTGGGTTTGGAAGCGCTACTTCGTTGGC
AGCATCCAGAGAAAGGTTTATTGCTTCCCAAACAATTTTTATCCGACCTCAATAATCATCCTCTTTCTCTACAGATTGGT
GATTGGGTGCTTCATCAGGTATTACATCAAGTTGAAGAATTGCTCGCTTGCAATATAAAAATCCCCATCAATGTTAATGT
TAGTGCTTATCAACTGCAACATCCCAACTTTGTCAAAAAACTGTTTGACACATTAGCACGATACCCTAATGTTCCTCATC
GCCTGCTTGTGCTTGAAATCCTTGAAACAGAAGCTATTGAAGATTTAACCCTAGTATCCCAGATAATAGCCGAGTGCAAG
GCTAAAGGAATCAACTTTTCCTTGGATGACTTTGGAACAGGTTATGCTTCTTTAACTTTCCTAAAAGAATTGAGTACCTC
GGAAGTGAAAATCGATCGAAGTTTTATCATTAACATCTTTGATAACCCTAAAGATCTCGCTATTTTGAAAATAATTATAG
AGTCTTGCAAAGTGATTGGCCGCACCCTGATTGCTGAAGGAGTTGAAACAGTAGCACATGGGAAACTATTAGAATTACTT
GGTTGCCATCTAATCCAGGGATACGCCATTGCCAAACCTATCCCTCCTGCAAAATTAATTATATGGATAAAAAACTGGCA
TCTTGGCCCAGAATGGAGAGAAACCAGATTTTCACAAGCAGAACTATCTAATCTGGTAAAAATCTCCATAAAACACTATC
TACATTACCAATCAATCAGACTTTATTTAGAGAATAATCAATCCCCTAAACCTGAATTATCACTTGAAGTATGTCCAATA
GAACAGTGGCTTATTGAAAATCAACAAACAATCAAAGAAAGCAAACGATTTAAAAAAGTGTGTGATTTGCATCACAAAGA
ACATGAGGTGGGAAATACAATAATTCAGCTAATTCGGACAGGGCAAAAAGAACAAGTGGACAAACAACTGGCAAAGCTTG
ATGGCTTAAGAGATAAGTTCTTGAAAGAGTTAATGAATTTAATTTTTTAA

Upstream 100 bases:

>100_bases
TATTAATTAAAAAAGAACCCTTGCCTGAACGTCGAATCATCGGTGATTTATCTGATAAGCAAAAAGTTATTTCTGCTTTG
GAAATGGATTAGGTGATATC

Downstream 100 bases:

>100_bases
TTCAATTACTATTTGAAAGTGTTGTAGAATGAATTTCAATAAAAAATATTTTTTATTCAATGAGTTATAAATTAAAATGT
AGGTGGGTATCACTAATGAC

Product: sensory box protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLFGAIRTELIGTNFLYPMAADETQEVEILKSSNEILTA
HMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGISSAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAI
FQSRKQNEKFYKELWKILAEKGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIENFKYY
DYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIRVFDSNSKNSLLDFPPNIRDKIILEVVNRIDRTSPKKMFYSRIGL
GEFIVIYFIKSRIEVMASIAQRMIEKLACPYYIDHQTIILQTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFE
FFDPQVEERIIEFNKRIESVSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIG
DWVLHQVLHQVEELLACNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLVLEILETEAIEDLTLVSQIIAECK
AKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELL
GCHLIQGYAIAKPIPPAKLIIWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPI
EQWLIENQQTIKESKRFKKVCDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKFLKELMNLIF

Sequences:

>Translated_789_residues
MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLFGAIRTELIGTNFLYPMAADETQEVEILKSSNEILTA
HMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGISSAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAI
FQSRKQNEKFYKELWKILAEKGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIENFKYY
DYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIRVFDSNSKNSLLDFPPNIRDKIILEVVNRIDRTSPKKMFYSRIGL
GEFIVIYFIKSRIEVMASIAQRMIEKLACPYYIDHQTIILQTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFE
FFDPQVEERIIEFNKRIESVSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIG
DWVLHQVLHQVEELLACNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLVLEILETEAIEDLTLVSQIIAECK
AKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELL
GCHLIQGYAIAKPIPPAKLIIWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPI
EQWLIENQQTIKESKRFKKVCDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKFLKELMNLIF
>Mature_789_residues
MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLFGAIRTELIGTNFLYPMAADETQEVEILKSSNEILTA
HMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGISSAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAI
FQSRKQNEKFYKELWKILAEKGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIENFKYY
DYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIRVFDSNSKNSLLDFPPNIRDKIILEVVNRIDRTSPKKMFYSRIGL
GEFIVIYFIKSRIEVMASIAQRMIEKLACPYYIDHQTIILQTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFE
FFDPQVEERIIEFNKRIESVSKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIG
DWVLHQVLHQVEELLACNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLVLEILETEAIEDLTLVSQIIAECK
AKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIFDNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELL
GCHLIQGYAIAKPIPPAKLIIWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPI
EQWLIENQQTIKESKRFKKVCDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKFLKELMNLIF

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=561, Percent_Identity=26.3814616755793, Blast_Score=183, Evalue=4e-47,
Organism=Escherichia coli, GI87081921, Length=446, Percent_Identity=28.47533632287, Blast_Score=173, Evalue=5e-44,
Organism=Escherichia coli, GI226510982, Length=428, Percent_Identity=27.1028037383178, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=29.7959183673469, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=31.3008130081301, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1788502, Length=260, Percent_Identity=28.4615384615385, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787055, Length=242, Percent_Identity=30.1652892561983, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=28.2786885245902, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081743, Length=257, Percent_Identity=29.9610894941634, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=30.0395256916996, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=29.7959183673469, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788849, Length=242, Percent_Identity=29.3388429752066, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787410, Length=245, Percent_Identity=23.265306122449, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 91101; Mature: 91101

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLFGAIRTELIGTNFLYPM
CCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
AADETQEVEILKSSNEILTAHMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGIS
CCCCCHHHHHEECCCCEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCH
SAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAIFQSRKQNEKFYKELWKILAE
HHHCCEEEECCCCCEEECCHHHHHHCCCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
KGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIENFKYY
CCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHH
DYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIRVFDSNSKNSLLDFPPNIRDKIILE
HHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHH
VVNRIDRTSPKKMFYSRIGLGEFIVIYFIKSRIEVMASIAQRMIEKLACPYYIDHQTIIL
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHH
QTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFEFFDPQVEERIIEFNKRIESV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
SKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEHH
DWVLHQVLHQVEELLACNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLVLEI
HHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHH
LETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIF
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHCCCCCEEECCEEEEEEC
DNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEE
IWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPI
EEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCH
EQWLIENQQTIKESKRFKKVCDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
LKELMNLIF
HHHHHHHHC
>Mature Secondary Structure
MISNEHINTQNFWYQLVEKMAIGVLVINNEGQILYANDYAVQLFGAIRTELIGTNFLYPM
CCCCCCCCHHHHHHHHHHHHHCEEEEECCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCC
AADETQEVEILKSSNEILTAHMTVRKSIWENRQVWIISLFDITELKLKEKLLKISSKGIS
CCCCCHHHHHEECCCCEEEHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCH
SAFEGIIITDSEGTILEANQAFMKMTGYTEQEVIGQKPAIFQSRKQNEKFYKELWKILAE
HHHCCEEEECCCCCEEECCHHHHHHCCCCHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHH
KGQWSGELWAKKKNKKLFPAFLAISSVKNSEGDVINYIGYYHDLTLIKKQEQQIENFKYY
CCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHH
DYLTGLPNKFLLTQRLQMLISGLSEENKELIVFNIRVFDSNSKNSLLDFPPNIRDKIILE
HHHHCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHH
VVNRIDRTSPKKMFYSRIGLGEFIVIYFIKSRIEVMASIAQRMIEKLACPYYIDHQTIIL
HHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHH
QTIIGLTAYYKNSAFSAEDLLQQSEIARHKAQINGVNIFEFFDPQVEERIIEFNKRIESV
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHH
SKAMQLNELKVYYQPIVELNTAKVVGLEALLRWQHPEKGLLLPKQFLSDLNNHPLSLQIG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEEEHH
DWVLHQVLHQVEELLACNIKIPINVNVSAYQLQHPNFVKKLFDTLARYPNVPHRLLVLEI
HHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHH
LETEAIEDLTLVSQIIAECKAKGINFSLDDFGTGYASLTFLKELSTSEVKIDRSFIINIF
HHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCHHHHHHHHHCCCCCEEECCEEEEEEC
DNPKDLAILKIIIESCKVIGRTLIAEGVETVAHGKLLELLGCHLIQGYAIAKPIPPAKLI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEE
IWIKNWHLGPEWRETRFSQAELSNLVKISIKHYLHYQSIRLYLENNQSPKPELSLEVCPI
EEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCEEEECCH
EQWLIENQQTIKESKRFKKVCDLHHKEHEVGNTIIQLIRTGQKEQVDKQLAKLDGLRDKF
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
LKELMNLIF
HHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]