Click here to switch to the map view.

The map label for this gene is 52841311

Identifier: 52841311

GI number: 52841311

Start: 1172002

End: 1173711

Strand: Reverse

Name: 52841311

Synonym: lpg1077

Alternate gene names: NA

Gene position: 1173711-1172002 (Counterclockwise)

Preceding gene: 52841312

Following gene: 52841310

Centisome position: 34.54

GC content: 43.16

Gene sequence:

>1710_bases
ATGAATTCAGAACAAATATATCATGTTGATTTTAAACAGTCTAAACGCATCAAATCGTTTCACTATGCAGGTGGACTATT
CCAGTTAACCTCAGATGGGGTAATTTTTGTTGGTAAGGATAAAGACAATAATGAGCTACCTCCTCGATGGATTTGCTCTT
CGTTGTCTGTGGTCGCTAAAACTCGTGATGCCAATAGTGGCGAATGGGGTCGATTACTTGAGTGGGTGGATGATGATGGG
ATTAAGCATCAATGGGCTATGCCTTTGGCTTTATTGCAAGGAGACTCCAGCGATGTAAGACGGGAGCTGGCGCGATTGGG
ATTGACCATTTCACCCAGTAAAACAGCTCGTGATTTATTAGCTTCCTATATCCAAGTCTTTCCAGTCGAAGAGCGTGCTC
GTTGTGTCGATAAACTGGGCTGGTATAAAGAAGTCTTTGTTACCGCTAATGAAGCCATAGGGCAATCCCTGTCTGTTGCA
GGTAGTGTTGAGGATTGGCGAAACTCTATCTCACGATTAGCAGATGGTAATTCTCGCTTGGTATTTGCTATTTCCGCAGC
CTTTGCTCCAAGCCTTGCCAATCTTGTTGGTGAAGATTCAGGTGGCTTTCATTTCAGAGGAGCTTCCTCTTCTGGTAAAA
CAACCGCTTTAAAAGTAGCAGCTTCTGTTTGGGGTAAACCAGATAGTTATATTCGTTTATGGCGAAGCACAGCGAATGGG
TTAGAAGGATTGGCAGCACTTCATAATGATGGATTATTAATCCTCAATGAGCTGAGCCAGATGGATCCTAAAGAAGCTGG
AGAATGTGCCTATCTACTTGCAAATGGTCAAGGTAAAACAAGAGCTTCTCGTTGTGGTACCGCAAGACAGTCCATGCGTT
GGTCATTACTTTTCTTATCAGCTGGTGAGGAGTCATTAACTTCATTAATGGCAAAAGCTGGGCAGCGATGCAATGCAGGT
CAAGAAATTCGGTTAGCAGATATTGAAGCGGATGCTGGTGCAGAGATGGGGTTATTTGAGCAGTTACATGATCATATAAA
CCCAGCCGCTATGTCACTCGCATTAAAAGAAGCTGCCAGTCAATATCATGGTGCTGTTGGTCTAGCATGGCTCCATAAAA
TTGTGAAACATCGCGCCGAATTGATCGCCCTACTCACTAATAAAATTCAGCATTTTGTTGCTAAAGTCACTAAACCAGAA
CATTCTGGTCAAATTCAACGAGTAGCCAGACGCTTTGCGTTGGTTGCCATGGCTGGAGAAATAGCGACTCATTACGAACT
AACTGGATGGACACGTGGCACAGCATGTAATCCGGCAGAAAAATGCTTTAACGCTTGGCTAAAAGATTTTGGTGAGCATG
GTAATAGAGAAGACCGAGCTATACTGTCACAAGTTCGTGCGTTCTTTGAGAAAGAAGGAGCGAGCCGGTTTGAAAACGAA
AATCATCCCAACAGTGAACGCCTTTTTAATCGGGCTGGCTTTTTTCACACGGACAGCGAGGGCTTTCGTGTTTTTATGGT
TTTATCTGAAGTGTACAGGAAAGAGATCTGTCAAGGATTTGAGCCTAAAATGGTGAATAAAGTTCTTATTAATGCTGGCT
GGATAGTCCCCGGTAATGACGGCAAAGCATCTCAAAAACGAAGAATTAAAGGGATTGGTATTCCTAGATGTTATATTTTC
ACTGAGAAAGTTTGGTCTGACGACTATTAA

Upstream 100 bases:

>100_bases
CAATGTGTTCATAACACCCATCAAGAAGCGGTTTAGCCTTTTTTTGAATAATTGGAAGGTGGTAGCTCACCTTCCTGCGA
CAGTTGTTGGAGAGAATAAA

Downstream 100 bases:

>100_bases
TTGTCCCACTCGTTCCACTGTCGATTTTGATAGTGGAACATCTAAAGTCCAGTAACTACTGGGGTGTTCCACTTGTCCCA
GTAGTTCCACGTATTTTTTA

Product: inner membrane protein

Products: NA

Alternate protein names: Prophage Primase; Superfamily II Helicase; Bifunctional DNA Primase/Polymerase; DNA/RNA Helicase; DNA Helicase Inner Membrane Protein; Conserved Domain Protein; Inner Membrane; Zinc Finger CHC2-Family Protein; Primase C 2 Family; Inner Membrane Protein Phage Origin; DNA Primase TraC

Number of amino acids: Translated: 569; Mature: 569

Protein sequence:

>569_residues
MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNNELPPRWICSSLSVVAKTRDANSGEWGRLLEWVDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLTISPSKTARDLLASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVA
GSVEDWRNSISRLADGNSRLVFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALKVAASVWGKPDSYIRLWRSTANG
LEGLAALHNDGLLILNELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEESLTSLMAKAGQRCNAG
QEIRLADIEADAGAEMGLFEQLHDHINPAAMSLALKEAASQYHGAVGLAWLHKIVKHRAELIALLTNKIQHFVAKVTKPE
HSGQIQRVARRFALVAMAGEIATHYELTGWTRGTACNPAEKCFNAWLKDFGEHGNREDRAILSQVRAFFEKEGASRFENE
NHPNSERLFNRAGFFHTDSEGFRVFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQKRRIKGIGIPRCYIF
TEKVWSDDY

Sequences:

>Translated_569_residues
MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNNELPPRWICSSLSVVAKTRDANSGEWGRLLEWVDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLTISPSKTARDLLASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVA
GSVEDWRNSISRLADGNSRLVFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALKVAASVWGKPDSYIRLWRSTANG
LEGLAALHNDGLLILNELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEESLTSLMAKAGQRCNAG
QEIRLADIEADAGAEMGLFEQLHDHINPAAMSLALKEAASQYHGAVGLAWLHKIVKHRAELIALLTNKIQHFVAKVTKPE
HSGQIQRVARRFALVAMAGEIATHYELTGWTRGTACNPAEKCFNAWLKDFGEHGNREDRAILSQVRAFFEKEGASRFENE
NHPNSERLFNRAGFFHTDSEGFRVFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQKRRIKGIGIPRCYIF
TEKVWSDDY
>Mature_569_residues
MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNNELPPRWICSSLSVVAKTRDANSGEWGRLLEWVDDDG
IKHQWAMPLALLQGDSSDVRRELARLGLTISPSKTARDLLASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVA
GSVEDWRNSISRLADGNSRLVFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALKVAASVWGKPDSYIRLWRSTANG
LEGLAALHNDGLLILNELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLSAGEESLTSLMAKAGQRCNAG
QEIRLADIEADAGAEMGLFEQLHDHINPAAMSLALKEAASQYHGAVGLAWLHKIVKHRAELIALLTNKIQHFVAKVTKPE
HSGQIQRVARRFALVAMAGEIATHYELTGWTRGTACNPAEKCFNAWLKDFGEHGNREDRAILSQVRAFFEKEGASRFENE
NHPNSERLFNRAGFFHTDSEGFRVFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGNDGKASQKRRIKGIGIPRCYIF
TEKVWSDDY

Specific function: Unknown

COG id: COG5519

COG function: function code L; Superfamily II helicase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63056; Mature: 63056

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNNELPPRWICSSLSVVAK
CCCCEEEEECCHHCCCHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHH
TRDANSGEWGRLLEWVDDDGIKHQWAMPLALLQGDSSDVRRELARLGLTISPSKTARDLL
CCCCCCCCHHHHHHHHCCCCCCCHHHCCHHEECCCHHHHHHHHHHCCCEECCCHHHHHHH
ASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVAGSVEDWRNSISRLADGNSRL
HHHHHHCCCHHHHHHHHHHCCHHHHEEECCHHHCCCHHHCCCHHHHHHHHHHHHCCCCEE
VFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALKVAASVWGKPDSYIRLWRSTANG
EEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
LEGLAALHNDGLLILNELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLS
HHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEE
AGEESLTSLMAKAGQRCNAGQEIRLADIEADAGAEMGLFEQLHDHINPAAMSLALKEAAS
CCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
QYHGAVGLAWLHKIVKHRAELIALLTNKIQHFVAKVTKPEHSGQIQRVARRFALVAMAGE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IATHYELTGWTRGTACNPAEKCFNAWLKDFGEHGNREDRAILSQVRAFFEKEGASRFENE
HHHCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHCCCC
NHPNSERLFNRAGFFHTDSEGFRVFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGND
CCCCHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCC
GKASQKRRIKGIGIPRCYIFTEKVWSDDY
CCHHHHHHHCCCCCCEEEEEEHHHCCCCC
>Mature Secondary Structure
MNSEQIYHVDFKQSKRIKSFHYAGGLFQLTSDGVIFVGKDKDNNELPPRWICSSLSVVAK
CCCCEEEEECCHHCCCHHHHHHCCCEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHH
TRDANSGEWGRLLEWVDDDGIKHQWAMPLALLQGDSSDVRRELARLGLTISPSKTARDLL
CCCCCCCCHHHHHHHHCCCCCCCHHHCCHHEECCCHHHHHHHHHHCCCEECCCHHHHHHH
ASYIQVFPVEERARCVDKLGWYKEVFVTANEAIGQSLSVAGSVEDWRNSISRLADGNSRL
HHHHHHCCCHHHHHHHHHHCCHHHHEEECCHHHCCCHHHCCCHHHHHHHHHHHHCCCCEE
VFAISAAFAPSLANLVGEDSGGFHFRGASSSGKTTALKVAASVWGKPDSYIRLWRSTANG
EEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
LEGLAALHNDGLLILNELSQMDPKEAGECAYLLANGQGKTRASRCGTARQSMRWSLLFLS
HHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEE
AGEESLTSLMAKAGQRCNAGQEIRLADIEADAGAEMGLFEQLHDHINPAAMSLALKEAAS
CCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
QYHGAVGLAWLHKIVKHRAELIALLTNKIQHFVAKVTKPEHSGQIQRVARRFALVAMAGE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
IATHYELTGWTRGTACNPAEKCFNAWLKDFGEHGNREDRAILSQVRAFFEKEGASRFENE
HHHCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHCCCC
NHPNSERLFNRAGFFHTDSEGFRVFMVLSEVYRKEICQGFEPKMVNKVLINAGWIVPGND
CCCCHHHHHHHCCCEEECCCCCEEHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEECCC
GKASQKRRIKGIGIPRCYIFTEKVWSDDY
CCHHHHHHHCCCCCCEEEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA