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The map label for this gene is ybeQ [H]

Identifier: 39997985

GI number: 39997985

Start: 3180104

End: 3180841

Strand: Direct

Name: ybeQ [H]

Synonym: GSU2894

Alternate gene names: 39997985

Gene position: 3180104-3180841 (Clockwise)

Preceding gene: 39997977

Following gene: 39997991

Centisome position: 83.38

GC content: 62.2

Gene sequence:

>738_bases
ATGCTGAATCGCACCACAAGAAAGATCGCCCTGGTTACCGGCCTGTCCCTGGCTCTTGCCCTTCCGTCGCTGTCATGGGC
AGATTTTGCCGCCGGGCAGCAGGCATTCCGGAACGGCGACTATGAGACGGCGTTGCGGGAGTACAGGGAGGACGGGGGCG
CCCAGGCCTGTTACCGGATCGGAACCCTCTACGACAACGGGTTCGGGGTCCCCGAAAACAAGCAGGAGGCCCTGAAGTGG
TACCACAAGGCGGCAGATCTCGGCCTGGACCAGGCACAGCACCGGATCGGAGAAATGTACGACAACGGGCGCGGCGTCGA
AGAGAACCCGGTCACCGCCCTGAGCTGGTATCTGAAGGCTGCCGAGCAGGGAATGGCGATCGCCCAGTTCAAGGTGGGCG
ACATGTATTACACCGGAAAGGGGGTCAAACAGGACGTGGCGCTGGGGGTCAAATGGCTGCAGCAGGCGGCCAAGATGGGA
AACATCAGGGCCCAGTACGAAATAGCGACCATGTACGAGACGGGCAGGGAGCTGAAAAAGGACATCTCCGAGGCGGCGAA
GTGGTATCTCCGGGCAGCGGAGCAGGGGCACAGCAGGGCCCAGTACACCATTGCGCTCCTTTTCCTCAAGGGCGAAGGCG
TCAGGCAGGATCGGGCGGAAGCCGTGAAATGGCTGCGCAAGGCCGCGGAAGGCGGGCACACCAAAGCCCAAATGGACCTG
GCAAGCCTGAGCCAGTAA

Upstream 100 bases:

>100_bases
CGTGCCGCCCCGGAGCTCCGCGGCAACGCGGGCAAACCCACTCTGGCGCGGGAACAGACAGACATCACCGGAGGAAAGAC
AGACATCACCGGAGGAAAGC

Downstream 100 bases:

>100_bases
ATGGGACTGAACGGGGTTCTGCTGCCGGCTACGGGCCGCTGAAGGAGCAGGTGCCGGCTTCAATGCAGCCGTCACCCAGG
CTGTCGCCGACCCGGACGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLNRTTRKIALVTGLSLALALPSLSWADFAAGQQAFRNGDYETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKW
YHKAADLGLDQAQHRIGEMYDNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG
NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDL
ASLSQ

Sequences:

>Translated_245_residues
MLNRTTRKIALVTGLSLALALPSLSWADFAAGQQAFRNGDYETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKW
YHKAADLGLDQAQHRIGEMYDNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG
NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDL
ASLSQ
>Mature_245_residues
MLNRTTRKIALVTGLSLALALPSLSWADFAAGQQAFRNGDYETALREYREDGGAQACYRIGTLYDNGFGVPENKQEALKW
YHKAADLGLDQAQHRIGEMYDNGRGVEENPVTALSWYLKAAEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMG
NIRAQYEIATMYETGRELKKDISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDL
ASLSQ

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=185, Percent_Identity=32.972972972973, Blast_Score=95, Evalue=5e-20,
Organism=Homo sapiens, GI151301150, Length=162, Percent_Identity=36.4197530864198, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI33620759, Length=222, Percent_Identity=29.2792792792793, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI154689719, Length=170, Percent_Identity=30.5882352941176, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87081769, Length=175, Percent_Identity=39.4285714285714, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1786867, Length=126, Percent_Identity=34.1269841269841, Blast_Score=77, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17563256, Length=207, Percent_Identity=27.536231884058, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI21355295, Length=242, Percent_Identity=29.3388429752066, Blast_Score=85, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 27278; Mature: 27278

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRTTRKIALVTGLSLALALPSLSWADFAAGQQAFRNGDYETALREYREDGGAQACYRI
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
GTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMYDNGRGVEENPVTALSWYLKA
HHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMGNIRAQYEIATMYETGRELKK
HHCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDL
HHHHHHHHHHHHHHHCCCHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ASLSQ
HHCCC
>Mature Secondary Structure
MLNRTTRKIALVTGLSLALALPSLSWADFAAGQQAFRNGDYETALREYREDGGAQACYRI
CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
GTLYDNGFGVPENKQEALKWYHKAADLGLDQAQHRIGEMYDNGRGVEENPVTALSWYLKA
HHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AEQGMAIAQFKVGDMYYTGKGVKQDVALGVKWLQQAAKMGNIRAQYEIATMYETGRELKK
HHCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
DISEAAKWYLRAAEQGHSRAQYTIALLFLKGEGVRQDRAEAVKWLRKAAEGGHTKAQMDL
HHHHHHHHHHHHHHHCCCHHEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
ASLSQ
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]