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The map label for this gene is ywoH [H]

Identifier: 39997682

GI number: 39997682

Start: 2850867

End: 2851295

Strand: Direct

Name: ywoH [H]

Synonym: GSU2587

Alternate gene names: 39997682

Gene position: 2850867-2851295 (Clockwise)

Preceding gene: 39997677

Following gene: 39997683

Centisome position: 74.74

GC content: 55.71

Gene sequence:

>429_bases
ATGAATGATGACCTGTGCTACAAGCTGAACTACCTGGCCCGGCTGATTCTGTCCAAGGTGAATGAAAAAATAAAACCGCA
CGGAGTAACGCAGGGGCAACTTCCGGTTCTTTGCTGCCTGCATGACGCGGAAGGACAGACTCAAGCCGAACTGTGCAAGA
ATATTCAGGTTGAGCAACCAACCATGGCCAATACGTTGCGACGCATGGAGCGGGACGGTCTGATCTTCCGGACCGCCAGC
GACAAGGACAAACGGCAGTCACGGGTGTATATAACCGAGCGGACCCGCCCGACAGTCGAAGCCTTACAGGAGAAACGGGA
CGAGGTTGTCGCCGCGATGGTGCGGCACATGTCGCCAGAGGACCTGGCAACGTTCACCCGACTGCTCGATGTCGCTACAA
AGGCCTTGGAGAACCCGGAAACAGAGTAA

Upstream 100 bases:

>100_bases
TGCCAGCAACCAATTCGTCTCATATCCGTTTGACAATGGATAGCCAACTATGTTTAAGTATAGCCGGCTATACAAAGAGG
ACATCACCAGGAGGCCCGGA

Downstream 100 bases:

>100_bases
TCAACAGGAGAATCTCAATGCAAACGTTTGATGTTGTTGTTATCGGCGGCGGTCCCGGAGGCATGACCGCAGGGATGATG
CTGAAGCAGGCTGGCAAATC

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MNDDLCYKLNYLARLILSKVNEKIKPHGVTQGQLPVLCCLHDAEGQTQAELCKNIQVEQPTMANTLRRMERDGLIFRTAS
DKDKRQSRVYITERTRPTVEALQEKRDEVVAAMVRHMSPEDLATFTRLLDVATKALENPETE

Sequences:

>Translated_142_residues
MNDDLCYKLNYLARLILSKVNEKIKPHGVTQGQLPVLCCLHDAEGQTQAELCKNIQVEQPTMANTLRRMERDGLIFRTAS
DKDKRQSRVYITERTRPTVEALQEKRDEVVAAMVRHMSPEDLATFTRLLDVATKALENPETE
>Mature_142_residues
MNDDLCYKLNYLARLILSKVNEKIKPHGVTQGQLPVLCCLHDAEGQTQAELCKNIQVEQPTMANTLRRMERDGLIFRTAS
DKDKRQSRVYITERTRPTVEALQEKRDEVVAAMVRHMSPEDLATFTRLLDVATKALENPETE

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081950, Length=130, Percent_Identity=28.4615384615385, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16256; Mature: 16256

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDDLCYKLNYLARLILSKVNEKIKPHGVTQGQLPVLCCLHDAEGQTQAELCKNIQVEQP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCC
TMANTLRRMERDGLIFRTASDKDKRQSRVYITERTRPTVEALQEKRDEVVAAMVRHMSPE
HHHHHHHHHHHCCEEEEECCCCCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHH
DLATFTRLLDVATKALENPETE
HHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNDDLCYKLNYLARLILSKVNEKIKPHGVTQGQLPVLCCLHDAEGQTQAELCKNIQVEQP
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCC
TMANTLRRMERDGLIFRTASDKDKRQSRVYITERTRPTVEALQEKRDEVVAAMVRHMSPE
HHHHHHHHHHHCCEEEEECCCCCHHHCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHH
DLATFTRLLDVATKALENPETE
HHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]