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The map label for this gene is arnD [H]

Identifier: 39997652

GI number: 39997652

Start: 2819677

End: 2820612

Strand: Direct

Name: arnD [H]

Synonym: GSU2557

Alternate gene names: 39997652

Gene position: 2819677-2820612 (Clockwise)

Preceding gene: 39997651

Following gene: 39997653

Centisome position: 73.93

GC content: 69.34

Gene sequence:

>936_bases
ATGGAACGGCCAACCATCGCCATCAAGGTCGATGCCGACACCTTCGTGGGGACCCGGGACGGCATCCCGCGCATCCTCGA
CATCCTCGGCCGCTTCGGGGTCAAGGCGACATTCTACTTTTCCCTGGGTCCCGACAATACCGGCAAGGCGGTGCGCCGCA
TCATCACCCGGCGGGGATTCCTCCGGACCAGCCTCCGGCTCAACGCACCGGCCCTGCTGGGGCCGCGGACCCTTCTCTCG
GGCCTGCTGATCCCGCCCCCCATCATCGGCAACCGGCTCGCCGACACCATCCGGCTCACTGCCCGCCTCGGCCACGAAGT
GGGCATCCACGGCTGGGACCACGTAAAGTGGCACGACCTTCTTCCCTGGATTCCGAAAAAGATGATCGCCCTGGAACTGG
GCCGCGCCTGCGCCCTCTTCGAGGAGGTGATGGGACGACGGGCCCGGACCGCCGCGGCGCCCGGCTGGACCGTGAGCGCC
GACTCCCTTGAAATCCAGGACTCCATGCTCCTGTCCTTCTGCAGCGATTGCCGGGGACGGACCCCCTTCTACCCGGTTGT
GGACGGACGGCGGTTCGGCACCCTCCAGGTGCCCACCACCCTGCCGACCCTGGACGAACTGCTGGGCGGGGGGATCGCCA
CGGAGCGGGAGGCCGTGGACCGGCTGATGGGCCTGGTGGGGCCGGGACTCAACGTCCACACGGTGCAGGCCGAAATCGAA
GGGAAACGCTATGCGCCGCACCTGGCGTCGCTGCTGGACCGGCTCACGGGAACCGGCGCCCGCTTCGTCACTCTGGGCGA
AGCCGCGGACGAGGCCAAGCGGGCAACCGTGCCCGTCTGCCGGCTCACCATGGAGGAGATCCCGGGCCGTCCCGGGCGGG
TGGCGGTTCAGGGCGAGGAATGGAGCGAACCGGGGCCGGCGGCCGGAGAACCGTGA

Upstream 100 bases:

>100_bases
CTGACCGAAGCCCACCCGAACCAACGGATCCGGACGATACTCCCCGAAGCGGCCGCCCCCTGGGATCTGCTACGGCGGGA
ACGGGACGACTGAGGTCGCC

Downstream 100 bases:

>100_bases
TTCCAGGCGTTGATCACCAGAGGAGCATTGGGGAGGGAGCCATGACGTCATTCACCGCCTTCGCCCTGCCGGGCGAACTT
GACCTGAACCGGCTGGCCGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MERPTIAIKVDADTFVGTRDGIPRILDILGRFGVKATFYFSLGPDNTGKAVRRIITRRGFLRTSLRLNAPALLGPRTLLS
GLLIPPPIIGNRLADTIRLTARLGHEVGIHGWDHVKWHDLLPWIPKKMIALELGRACALFEEVMGRRARTAAAPGWTVSA
DSLEIQDSMLLSFCSDCRGRTPFYPVVDGRRFGTLQVPTTLPTLDELLGGGIATEREAVDRLMGLVGPGLNVHTVQAEIE
GKRYAPHLASLLDRLTGTGARFVTLGEAADEAKRATVPVCRLTMEEIPGRPGRVAVQGEEWSEPGPAAGEP

Sequences:

>Translated_311_residues
MERPTIAIKVDADTFVGTRDGIPRILDILGRFGVKATFYFSLGPDNTGKAVRRIITRRGFLRTSLRLNAPALLGPRTLLS
GLLIPPPIIGNRLADTIRLTARLGHEVGIHGWDHVKWHDLLPWIPKKMIALELGRACALFEEVMGRRARTAAAPGWTVSA
DSLEIQDSMLLSFCSDCRGRTPFYPVVDGRRFGTLQVPTTLPTLDELLGGGIATEREAVDRLMGLVGPGLNVHTVQAEIE
GKRYAPHLASLLDRLTGTGARFVTLGEAADEAKRATVPVCRLTMEEIPGRPGRVAVQGEEWSEPGPAAGEP
>Mature_311_residues
MERPTIAIKVDADTFVGTRDGIPRILDILGRFGVKATFYFSLGPDNTGKAVRRIITRRGFLRTSLRLNAPALLGPRTLLS
GLLIPPPIIGNRLADTIRLTARLGHEVGIHGWDHVKWHDLLPWIPKKMIALELGRACALFEEVMGRRARTAAAPGWTVSA
DSLEIQDSMLLSFCSDCRGRTPFYPVVDGRRFGTLQVPTTLPTLDELLGGGIATEREAVDRLMGLVGPGLNVHTVQAEIE
GKRYAPHLASLLDRLTGTGARFVTLGEAADEAKRATVPVCRLTMEEIPGRPGRVAVQGEEWSEPGPAAGEP

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788590, Length=295, Percent_Identity=35.5932203389831, Blast_Score=183, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 33803; Mature: 33803

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERPTIAIKVDADTFVGTRDGIPRILDILGRFGVKATFYFSLGPDNTGKAVRRIITRRGF
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCH
LRTSLRLNAPALLGPRTLLSGLLIPPPIIGNRLADTIRLTARLGHEVGIHGWDHVKWHDL
HHHHHEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCCCHHHH
LPWIPKKMIALELGRACALFEEVMGRRARTAAAPGWTVSADSLEIQDSMLLSFCSDCRGR
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCC
TPFYPVVDGRRFGTLQVPTTLPTLDELLGGGIATEREAVDRLMGLVGPGLNVHTVQAEIE
CCCEECCCCCEECEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
GKRYAPHLASLLDRLTGTGARFVTLGEAADEAKRATVPVCRLTMEEIPGRPGRVAVQGEE
CCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCC
WSEPGPAAGEP
CCCCCCCCCCC
>Mature Secondary Structure
MERPTIAIKVDADTFVGTRDGIPRILDILGRFGVKATFYFSLGPDNTGKAVRRIITRRGF
CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCH
LRTSLRLNAPALLGPRTLLSGLLIPPPIIGNRLADTIRLTARLGHEVGIHGWDHVKWHDL
HHHHHEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCCCCHHHH
LPWIPKKMIALELGRACALFEEVMGRRARTAAAPGWTVSADSLEIQDSMLLSFCSDCRGR
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHCCC
TPFYPVVDGRRFGTLQVPTTLPTLDELLGGGIATEREAVDRLMGLVGPGLNVHTVQAEIE
CCCEECCCCCEECEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEC
GKRYAPHLASLLDRLTGTGARFVTLGEAADEAKRATVPVCRLTMEEIPGRPGRVAVQGEE
CCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCC
WSEPGPAAGEP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA