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The map label for this gene is arnC [H]

Identifier: 39997648

GI number: 39997648

Start: 2815761

End: 2816474

Strand: Direct

Name: arnC [H]

Synonym: GSU2553

Alternate gene names: 39997648

Gene position: 2815761-2816474 (Clockwise)

Preceding gene: 39997636

Following gene: 39997649

Centisome position: 73.82

GC content: 62.04

Gene sequence:

>714_bases
ATGAAGATTTCCTTTGTCATTCCGGTGCATAACGAACAGGACAATCTCCTACCCCTTTTCGACGAAATCACCCGGATGGC
CGATGCCGAACGGTACGAATACGAGATCATCTTCGTCGACGACGGGAGCCGCGACAACAGCCTCCAGGTTCTAAAATCCC
TGGCGCGGGGCTGCCCGGCCGTTCGCTACCTATCGCTGGCCGCCAACCGGGGCCAGTCCGCGGCCCTGGGGGTGGGCTTC
GCCCACGCCGCCGGGGATGTCATCATCACCATGGACGCCGACGGACAGAACGATCCGGCCGATGTGCCGGCCATGATGGC
CCGTTACGGCGAAGGCTGCGACATGGTGACCGGCTGGCGCCGCAACAGGCGCGACACCCTGTCCAAACGGGTGGGGAGCA
GGATCGGCAACGGCATACGTAATCGTCTCACCGGGGAGAGCATTCACGACACCGGCTGCTCTCTGAAGGTCATGCGGGCG
GACATGGTTAAACGGATCAAGATGTTCAAGGGGATGCACCGTTTCCTGCCGACCCTCATGAGGATGGAGGGAGCCCGAGT
CGTTGAGATGGAGGTGAACCACCGCCCCCGGCGCCACGGCACATCCAACTACACCAACTGGCGGCGGGCCCGGGAGGGGT
TCTTCGACCTGCTGGCGGTGCGCTGGATGCAACGGCGGTATCAACCGGCAACGATAGGAGAAAAACATGTCTAA

Upstream 100 bases:

>100_bases
ATATATTCACGTAATTTTGTTGATTACGTTAGCGTTGGATATGCTATAACATCGATCAGCGAGACAGCATCCGGCAGAGC
GAGCGCCCACAGGACCGCAC

Downstream 100 bases:

>100_bases
GGCGGCGATGCTTACCATGGGAATCGGTTTCGCCGGACAGGCCCTGTTCTTCATGCGCTTTTTCGTCCAGTGGATCCATA
CCGAGCGCCGGAAGGAAAGC

Product: glycosyl transferase, group 2 family protein

Products: NA

Alternate protein names: Undecaprenyl-phosphate Ara4FN transferase; Ara4FN transferase [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKISFVIPVHNEQDNLLPLFDEITRMADAERYEYEIIFVDDGSRDNSLQVLKSLARGCPAVRYLSLAANRGQSAALGVGF
AHAAGDVIITMDADGQNDPADVPAMMARYGEGCDMVTGWRRNRRDTLSKRVGSRIGNGIRNRLTGESIHDTGCSLKVMRA
DMVKRIKMFKGMHRFLPTLMRMEGARVVEMEVNHRPRRHGTSNYTNWRRAREGFFDLLAVRWMQRRYQPATIGEKHV

Sequences:

>Translated_237_residues
MKISFVIPVHNEQDNLLPLFDEITRMADAERYEYEIIFVDDGSRDNSLQVLKSLARGCPAVRYLSLAANRGQSAALGVGF
AHAAGDVIITMDADGQNDPADVPAMMARYGEGCDMVTGWRRNRRDTLSKRVGSRIGNGIRNRLTGESIHDTGCSLKVMRA
DMVKRIKMFKGMHRFLPTLMRMEGARVVEMEVNHRPRRHGTSNYTNWRRAREGFFDLLAVRWMQRRYQPATIGEKHV
>Mature_237_residues
MKISFVIPVHNEQDNLLPLFDEITRMADAERYEYEIIFVDDGSRDNSLQVLKSLARGCPAVRYLSLAANRGQSAALGVGF
AHAAGDVIITMDADGQNDPADVPAMMARYGEGCDMVTGWRRNRRDTLSKRVGSRIGNGIRNRLTGESIHDTGCSLKVMRA
DMVKRIKMFKGMHRFLPTLMRMEGARVVEMEVNHRPRRHGTSNYTNWRRAREGFFDLLAVRWMQRRYQPATIGEKHV

Specific function: Catalyzes the transfer of 4-deoxy-4-formamido-L- arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788588, Length=209, Percent_Identity=38.2775119617225, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1788692, Length=209, Percent_Identity=29.1866028708134, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1787259, Length=98, Percent_Identity=36.734693877551, Blast_Score=64, Evalue=8e-12,
Organism=Saccharomyces cerevisiae, GI6325441, Length=136, Percent_Identity=30.8823529411765, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24585265, Length=214, Percent_Identity=28.0373831775701, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022857
- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: =2.7.8.30 [H]

Molecular weight: Translated: 26971; Mature: 26971

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISFVIPVHNEQDNLLPLFDEITRMADAERYEYEIIFVDDGSRDNSLQVLKSLARGCPA
CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCH
VRYLSLAANRGQSAALGVGFAHAAGDVIITMDADGQNDPADVPAMMARYGEGCDMVTGWR
HHHHHHHHCCCCCCEEECCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHH
RNRRDTLSKRVGSRIGNGIRNRLTGESIHDTGCSLKVMRADMVKRIKMFKGMHRFLPTLM
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
RMEGARVVEMEVNHRPRRHGTSNYTNWRRAREGFFDLLAVRWMQRRYQPATIGEKHV
HHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKISFVIPVHNEQDNLLPLFDEITRMADAERYEYEIIFVDDGSRDNSLQVLKSLARGCPA
CEEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCH
VRYLSLAANRGQSAALGVGFAHAAGDVIITMDADGQNDPADVPAMMARYGEGCDMVTGWR
HHHHHHHHCCCCCCEEECCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCHHHHH
RNRRDTLSKRVGSRIGNGIRNRLTGESIHDTGCSLKVMRADMVKRIKMFKGMHRFLPTLM
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
RMEGARVVEMEVNHRPRRHGTSNYTNWRRAREGFFDLLAVRWMQRRYQPATIGEKHV
HHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA