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The map label for this gene is rbcR [H]

Identifier: 39997618

GI number: 39997618

Start: 2780905

End: 2781801

Strand: Direct

Name: rbcR [H]

Synonym: GSU2523

Alternate gene names: 39997618

Gene position: 2780905-2781801 (Clockwise)

Preceding gene: 39997610

Following gene: 39997619

Centisome position: 72.91

GC content: 68.67

Gene sequence:

>897_bases
ATGAACCTCAAGCAGCTCGAAGTATTTCTGGCCGTCGCCGAGAGCGGCAGTTTCTCCCGTGGCGCCGAAGCCACCTTCCT
TACCCAGTCCACCGTAAGCCAGCACATTGCCGCCCTGGAGAGCGAGGTGGGCGTGCGGCTCCTGGACCGGACGAGCCGAG
GGGCGCTCCTCACCGAGGGGGGGAAAATCCTGCTGGAGCACGCCCGGAAAGTGGTGGCCGGCAGCCGCGAGATCAGCAAA
GTCATGCGGCGGTTCCGGGGACTTGAGGAGGCGGAGTTGCGCATCGGCGGCAGCACCATTCCCGCCGACTACATGATTCC
CGCCATGCTCGCCTCGTTCCTGGGCCGGCACCCCGGCGTCCAGGTGACGCTGCTCCAGGGGGACAGCCGCGACATCCTGG
ACCGGATCGAGCGGGAGGACGCGGAGGTGGGCATCATCGGCAGCCGTTTCGACGAGGAGGGGTTCACCTTCACCCCCCTC
GGCCGGGACGAGATACGACTCATCGCCGCCCCGGACCATCCTCTGGCGGGCACCGGAGCCGTTCCTCTCGCCGAGCTGGC
GAACCACGGCTTCGTCTTCCGCGAGCTGGGGTCGGGCACGGCCAAGAGCGTTGCCGAGGCGCTGGCGGGGGCGGGCCTGC
CCGCCGAGAAGCTCCACGTCCGCGCCTGCCTGGGAAGCAACGAGGCGGTCAAGCAGGCCGTTGCGGCGGGACTCGGCCTG
TCGTTCGTGTCGGAGCTGTCGGTGCGCAAGGAACTTGCCCGGGGCGAACTGGTCGAACTGCCGGTGGAGGGGCTGACCAT
TGCCCGGACCTTTTATCTCGTCGCCCGTACCGGCCGGGAACTCTCCCCCCCGGCAGTCGCCTTCATCGGCGAACTGACCG
GAACCCGGCTCGCCTGA

Upstream 100 bases:

>100_bases
GGATAAAATTATGCAAATTATCGACTAATTGACAGAAACAGGTCAAATTGATATTTTTCATATATAAAATAACTCCAATT
GAGAAAGGCGATAGCGCTCC

Downstream 100 bases:

>100_bases
CCCGCGGCTCGACGCTCCCTCCTATCGCGCACCATGGAAAAGATTCTCATCATAGACGACGAGGCGTTCATCCGCGAAAA
CGTGGAGCGGATCCTCACCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNLKQLEVFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGALLTEGGKILLEHARKVVAGSREISK
VMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHPGVQVTLLQGDSRDILDRIEREDAEVGIIGSRFDEEGFTFTPL
GRDEIRLIAAPDHPLAGTGAVPLAELANHGFVFRELGSGTAKSVAEALAGAGLPAEKLHVRACLGSNEAVKQAVAAGLGL
SFVSELSVRKELARGELVELPVEGLTIARTFYLVARTGRELSPPAVAFIGELTGTRLA

Sequences:

>Translated_298_residues
MNLKQLEVFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGALLTEGGKILLEHARKVVAGSREISK
VMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHPGVQVTLLQGDSRDILDRIEREDAEVGIIGSRFDEEGFTFTPL
GRDEIRLIAAPDHPLAGTGAVPLAELANHGFVFRELGSGTAKSVAEALAGAGLPAEKLHVRACLGSNEAVKQAVAAGLGL
SFVSELSVRKELARGELVELPVEGLTIARTFYLVARTGRELSPPAVAFIGELTGTRLA
>Mature_298_residues
MNLKQLEVFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGALLTEGGKILLEHARKVVAGSREISK
VMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHPGVQVTLLQGDSRDILDRIEREDAEVGIIGSRFDEEGFTFTPL
GRDEIRLIAAPDHPLAGTGAVPLAELANHGFVFRELGSGTAKSVAEALAGAGLPAEKLHVRACLGSNEAVKQAVAAGLGL
SFVSELSVRKELARGELVELPVEGLTIARTFYLVARTGRELSPPAVAFIGELTGTRLA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=282, Percent_Identity=31.5602836879433, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1790399, Length=285, Percent_Identity=30.8771929824561, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082132, Length=300, Percent_Identity=28.6666666666667, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=30.7692307692308, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI157672245, Length=214, Percent_Identity=31.3084112149533, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788748, Length=289, Percent_Identity=29.0657439446367, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI145693105, Length=296, Percent_Identity=24.6621621621622, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787879, Length=293, Percent_Identity=28.3276450511945, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=25.296442687747, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788296, Length=282, Percent_Identity=26.241134751773, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786713, Length=183, Percent_Identity=31.1475409836066, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790262, Length=293, Percent_Identity=25.5972696245734, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789639, Length=266, Percent_Identity=27.0676691729323, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787601, Length=295, Percent_Identity=23.0508474576271, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=29.2358803986711, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=272, Percent_Identity=26.1029411764706, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789173, Length=284, Percent_Identity=25.7042253521127, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788887, Length=208, Percent_Identity=27.8846153846154, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI2367136, Length=199, Percent_Identity=33.6683417085427, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082024, Length=178, Percent_Identity=32.0224719101124, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=27.0161290322581, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789204, Length=298, Percent_Identity=24.8322147651007, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787128, Length=296, Percent_Identity=25, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789440, Length=268, Percent_Identity=25.7462686567164, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788626, Length=242, Percent_Identity=29.3388429752066, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787806, Length=169, Percent_Identity=29.585798816568, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=176, Percent_Identity=23.8636363636364, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789506, Length=220, Percent_Identity=25, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31691; Mature: 31691

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKQLEVFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGALLTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECC
GKILLEHARKVVAGSREISKVMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHPGV
CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCCCC
QVTLLQGDSRDILDRIEREDAEVGIIGSRFDEEGFTFTPLGRDEIRLIAAPDHPLAGTGA
EEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCCCC
VPLAELANHGFVFRELGSGTAKSVAEALAGAGLPAEKLHVRACLGSNEAVKQAVAAGLGL
CCHHHHHCCCEEEEHHCCCHHHHHHHHHHCCCCCHHHHEEHHHCCCCHHHHHHHHHHHHH
SFVSELSVRKELARGELVELPVEGLTIARTFYLVARTGRELSPPAVAFIGELTGTRLA
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MNLKQLEVFLAVAESGSFSRGAEATFLTQSTVSQHIAALESEVGVRLLDRTSRGALLTEG
CCHHHEEEEEEEECCCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCEEECCCCCCCEEECC
GKILLEHARKVVAGSREISKVMRRFRGLEEAELRIGGSTIPADYMIPAMLASFLGRHPGV
CHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHCCCCCC
QVTLLQGDSRDILDRIEREDAEVGIIGSRFDEEGFTFTPLGRDEIRLIAAPDHPLAGTGA
EEEEEECCCHHHHHHHHHCCCCEEEEECCCCCCCCEECCCCCCCEEEEECCCCCCCCCCC
VPLAELANHGFVFRELGSGTAKSVAEALAGAGLPAEKLHVRACLGSNEAVKQAVAAGLGL
CCHHHHHCCCEEEEHHCCCHHHHHHHHHHCCCCCHHHHEEHHHCCCCHHHHHHHHHHHHH
SFVSELSVRKELARGELVELPVEGLTIARTFYLVARTGRELSPPAVAFIGELTGTRLA
HHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]