Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
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Accession | NC_002939 |
Length | 3,814,139 |
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The map label for this gene is yjjL [C]
Identifier: 39997586
GI number: 39997586
Start: 2737208
End: 2738470
Strand: Direct
Name: yjjL [C]
Synonym: GSU2491
Alternate gene names: 39997586
Gene position: 2737208-2738470 (Clockwise)
Preceding gene: 39997585
Following gene: 39997587
Centisome position: 71.76
GC content: 67.06
Gene sequence:
>1263_bases ATGATCGCCGGAATGCCCATGTCCGACAAGACCCGCTGGCTCCTCATACTCTGCCTGGCGCAGATATTCATCATGCTGGT GTTCATCAACTACTCGGCCGTGCTCCCGCTGCTCAAGGCCGAGTGGGGAATGAACAACACCATGGCGGGGTCGGTCTTTT CCGTCTACCAGCTGGGCTACATCGCGTCGGGTGTGATCCTGTCGGCCCTCACCGACCGGCTCAACACCAAGCGGATCTTC ATCGGGGCGGCCCTCTGGTCGGGGACGGCCAACCTGCTCTTCGGCCTCTACGCCCATGACTATGCCTCCGCCATGATCCT GCGCGCCCTGACCGGCATCGGCATGGGGGGCACCTACATGCCGGGGCTGAAGCTGGTGGCGGAGCGGTTCGAGCCGTCCA AACGGGGGCGCGCCGTGGGGATCTACGTGGGGGCGCTGGTGTTGGGGGCATCCCTGTCGCTGGCGCTGACCGGGGCCGTT GCCACGGTGGCCGGCTGGCGGGTTGCGATTCTCGTCTGCTCGGCCGGGGTCTACCTGGGCGCGGGGCTCTCCCTGATCGT CTTTCAGGGCTACGAGCAGGTCCGGCACGTGACATCAGACCAGACCTTCCAGAAGGAAATCGTGCGCAACAAGCCGGCGT TTCTCATGATCCTGGGCTACGGCTCGCACATGTGGGAGATGTACGGCATGCGGAGCTGGCTGGCGCCGTTCTTTACGGCA TCGCTGGTGCGGCAGGGGATCGATCAGGGGGCGGCCACCGGCTGGGCTGCCACCGCGGCGGCAGCCATCGTCGGCATCGG CACCTTTTCCACGGCCATCACCGGCACTCTCTCGGACCGGCTGGGCCGGACCAGGACCATCACCCTGGTCATGCTCGGCA GCGCCTCCCTGTCCTTCCTCTTCGGCTGGCTGGTCAACGTCTCCCCCTACCTGGCCGTGGCCGTGGGGCTGGTCTACGGC TACCTGATCGTTGCCGAGTCGCCGGTCTTCTCCACCGGCCTCACCGAGTTGGTGGCCCCCGGCTACCTGGGGGCGGCCAT GGGGCTCCAATCGCTGGTGGGCTACTCGCTGGGGATGATCTCACCCACCGTGTTCGGCTGGGCGCTGGATCTCTGCCGGG GCTGGGAGCCCTTCCCCGGCGTGAGCGGAGAGTGGGGGATCGCCTTTGCCACGGCCGGCGTGGGGGCGCTCACGGGGCCC ATCTTCATGTGGTTGCTGCGCCGCTGCCCCGAGAGCTCGCGCATGGCCGGGGGAAGGAAATGA
Upstream 100 bases:
>100_bases ACAGAGGCCCCGTTCCGACGGGGCCTCTTTTTTTCAGCCGCCGGTCAATTCCGTTGTCCCAGTGAATCAATCTGGTTATA CTTTTCCTGTTCATTAAACC
Downstream 100 bases:
>100_bases ACCGGCTCTCCCTGTTCCAGAAGATCCTGGTGGCCATGCTGACCCTGTCGCTGGTGCCGCTGCTGGTCTCTTCGGCCATC CTCGCCCTGAACCTGGGCAG
Product: major facilitator family transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Family Transporter; Facilitator Superfamily Permease; MFS Transporter; Permease Of Facilitator Superfamily; MFS Superfamily Transporter
Number of amino acids: Translated: 420; Mature: 420
Protein sequence:
>420_residues MIAGMPMSDKTRWLLILCLAQIFIMLVFINYSAVLPLLKAEWGMNNTMAGSVFSVYQLGYIASGVILSALTDRLNTKRIF IGAALWSGTANLLFGLYAHDYASAMILRALTGIGMGGTYMPGLKLVAERFEPSKRGRAVGIYVGALVLGASLSLALTGAV ATVAGWRVAILVCSAGVYLGAGLSLIVFQGYEQVRHVTSDQTFQKEIVRNKPAFLMILGYGSHMWEMYGMRSWLAPFFTA SLVRQGIDQGAATGWAATAAAAIVGIGTFSTAITGTLSDRLGRTRTITLVMLGSASLSFLFGWLVNVSPYLAVAVGLVYG YLIVAESPVFSTGLTELVAPGYLGAAMGLQSLVGYSLGMISPTVFGWALDLCRGWEPFPGVSGEWGIAFATAGVGALTGP IFMWLLRRCPESSRMAGGRK
Sequences:
>Translated_420_residues MIAGMPMSDKTRWLLILCLAQIFIMLVFINYSAVLPLLKAEWGMNNTMAGSVFSVYQLGYIASGVILSALTDRLNTKRIF IGAALWSGTANLLFGLYAHDYASAMILRALTGIGMGGTYMPGLKLVAERFEPSKRGRAVGIYVGALVLGASLSLALTGAV ATVAGWRVAILVCSAGVYLGAGLSLIVFQGYEQVRHVTSDQTFQKEIVRNKPAFLMILGYGSHMWEMYGMRSWLAPFFTA SLVRQGIDQGAATGWAATAAAAIVGIGTFSTAITGTLSDRLGRTRTITLVMLGSASLSFLFGWLVNVSPYLAVAVGLVYG YLIVAESPVFSTGLTELVAPGYLGAAMGLQSLVGYSLGMISPTVFGWALDLCRGWEPFPGVSGEWGIAFATAGVGALTGP IFMWLLRRCPESSRMAGGRK >Mature_420_residues MIAGMPMSDKTRWLLILCLAQIFIMLVFINYSAVLPLLKAEWGMNNTMAGSVFSVYQLGYIASGVILSALTDRLNTKRIF IGAALWSGTANLLFGLYAHDYASAMILRALTGIGMGGTYMPGLKLVAERFEPSKRGRAVGIYVGALVLGASLSLALTGAV ATVAGWRVAILVCSAGVYLGAGLSLIVFQGYEQVRHVTSDQTFQKEIVRNKPAFLMILGYGSHMWEMYGMRSWLAPFFTA SLVRQGIDQGAATGWAATAAAAIVGIGTFSTAITGTLSDRLGRTRTITLVMLGSASLSFLFGWLVNVSPYLAVAVGLVYG YLIVAESPVFSTGLTELVAPGYLGAAMGLQSLVGYSLGMISPTVFGWALDLCRGWEPFPGVSGEWGIAFATAGVGALTGP IFMWLLRRCPESSRMAGGRK
Specific function: Unknown
COG id: COG2814
COG function: function code G; Arabinose efflux permease
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44649; Mature: 44649
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: PS00962 RIBOSOMAL_S2_1 ; PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIAGMPMSDKTRWLLILCLAQIFIMLVFINYSAVLPLLKAEWGMNNTMAGSVFSVYQLGY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH IASGVILSALTDRLNTKRIFIGAALWSGTANLLFGLYAHDYASAMILRALTGIGMGGTYM HHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PGLKLVAERFEPSKRGRAVGIYVGALVLGASLSLALTGAVATVAGWRVAILVCSAGVYLG CHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AGLSLIVFQGYEQVRHVTSDQTFQKEIVRNKPAFLMILGYGSHMWEMYGMRSWLAPFFTA CCCCEEEECCHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH SLVRQGIDQGAATGWAATAAAAIVGIGTFSTAITGTLSDRLGRTRTITLVMLGSASLSFL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHH FGWLVNVSPYLAVAVGLVYGYLIVAESPVFSTGLTELVAPGYLGAAMGLQSLVGYSLGMI HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHC SPTVFGWALDLCRGWEPFPGVSGEWGIAFATAGVGALTGPIFMWLLRRCPESSRMAGGRK CHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHCCCCCCC >Mature Secondary Structure MIAGMPMSDKTRWLLILCLAQIFIMLVFINYSAVLPLLKAEWGMNNTMAGSVFSVYQLGY CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH IASGVILSALTDRLNTKRIFIGAALWSGTANLLFGLYAHDYASAMILRALTGIGMGGTYM HHHHHHHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PGLKLVAERFEPSKRGRAVGIYVGALVLGASLSLALTGAVATVAGWRVAILVCSAGVYLG CHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AGLSLIVFQGYEQVRHVTSDQTFQKEIVRNKPAFLMILGYGSHMWEMYGMRSWLAPFFTA CCCCEEEECCHHHHHHHCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHH SLVRQGIDQGAATGWAATAAAAIVGIGTFSTAITGTLSDRLGRTRTITLVMLGSASLSFL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHH FGWLVNVSPYLAVAVGLVYGYLIVAESPVFSTGLTELVAPGYLGAAMGLQSLVGYSLGMI HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHC SPTVFGWALDLCRGWEPFPGVSGEWGIAFATAGVGALTGPIFMWLLRRCPESSRMAGGRK CHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA