| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is scfA [H]
Identifier: 39997406
GI number: 39997406
Start: 2525147
End: 2526487
Strand: Direct
Name: scfA [H]
Synonym: GSU2308
Alternate gene names: 39997406
Gene position: 2525147-2526487 (Clockwise)
Preceding gene: 39997405
Following gene: 39997407
Centisome position: 66.2
GC content: 61.45
Gene sequence:
>1341_bases ATGAATATAGAAAAAGGGTTCGACAAGATCGTCAAGACCCTGCGTGTCATGATTACCGATCAGCCCGGCTACCTGGGGCG CCTGACCACTGCCATCGGCTCCGAAGGGGGCAACATCGGCGACATACGCCTCATCAGTTCGGGGCTTACCCACAACATTC GGGAGATTACCGTCTATGTGGACAACGACCAGCATCTGGAAATGATCCTCAAAGCCGTTGCCGCGGTTGAAGGGGTCATT GTCGAAGAGGTGATCGACCGGGTGCAGCAGGTTCACGAAGGGGGCAAGATTGCCGTCAGGAGCAGGGTTGAGATTAAGAC CATCGGCGATGTGCGGAAAATCTACACCCCGGGGGTGGCCTCCATCTGCCGCCAGATCCAGCAGAAGCCCCGGCTCGCCG ACACCTATACCGCCATCGGCAACACCGTGGCCATCGTCACCAACGGCACCGCCATCCTCGGCCTGGGGGACATCGGCCCA GTGGCCGGCATGCCGGTCATGGAGGGGAAGGCGGTGCTCTTCGACCACCTCGTGGGGATTTCCGGCGTCCCAATCCTGCT AAGAAGCAAAAACGTGGACCATATCGTGGACACTATCTGGCATCTGGCTCCCACATTCGGGGCCATCAAGCTGGAGGACA TCGCGGCACCGGACTGCTTCGAGATCGAGCGGCGGCTCGTGGAGATGCTGGACATTCCTGTCATGCACGATGACCAGCAC GGCACGGCAGTGGTGGTGCTGGCGTCACTGCTGAACGCAACCCGTTTCACCGGCACCAGGCTGCAGAATGCCACGATCGG AATCATCGGCCTGGGGGCGGCCGGCACCGGCATCGCCAAGCTGCTCATGGCCTACGGGGTGAAAAAAGTGGTCGGCACCG ATCTCAATCCCGGCGCCATGGAGATGCTGCAGACTCTGGGAGGAGAACCGACTAATCTGGCAGGGGTCATGGAGCGCGCC CAGGTGGTAATCGCCACCACCGGCTGCCCCGGGCTCATCAAACCCGACATGGTGAAACAGGGGCAGGTGATTCTGGCCCT CTCCAATCCGGATGCCGAGATTAAACCGCAGGATGCCATGACGGCCGGGGCATCCTTTGCCGCCGACGGCAAGAGCATCA ACAACGCCCTCGCTTTCCCCGGCATCTTCCGGGGAGCCCTCGACGCCCGTGCCAGCAGAATCAACAACCGGATGCTCATT GCCGCGGCCAAGGCCATCGCCTCACACGCCGAAGAGGGTGAGCTGGTGCCGGGCATCCTCAACCGGAACGTCCACCTGGC CGTAGCTGAAGCGGTGGCAAGGGCGGCAGCAGAGACAGGAGTCATCAAACCCCGCAATTAG
Upstream 100 bases:
>100_bases CTGATTTTCTCCGTGATCGTCGGTGAATACCGGCGAACCAGCCGGGTAGCCGCTGCCAGATATTAGCCACCACTCATCAG ACCAAGAGGAAGCGAACGGA
Downstream 100 bases:
>100_bases TACCACCGACCACCTTCGCAGTCCTCCCCACTCCCAACAGACCCGCCGACTTCGGCGGGTCTCACATTCAACCTTCATCC GAGCTGCTTGCCGACCGAGT
Product: malate oxidoreductase
Products: NA
Alternate protein names: NAD-ME 1 [H]
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MNIEKGFDKIVKTLRVMITDQPGYLGRLTTAIGSEGGNIGDIRLISSGLTHNIREITVYVDNDQHLEMILKAVAAVEGVI VEEVIDRVQQVHEGGKIAVRSRVEIKTIGDVRKIYTPGVASICRQIQQKPRLADTYTAIGNTVAIVTNGTAILGLGDIGP VAGMPVMEGKAVLFDHLVGISGVPILLRSKNVDHIVDTIWHLAPTFGAIKLEDIAAPDCFEIERRLVEMLDIPVMHDDQH GTAVVVLASLLNATRFTGTRLQNATIGIIGLGAAGTGIAKLLMAYGVKKVVGTDLNPGAMEMLQTLGGEPTNLAGVMERA QVVIATTGCPGLIKPDMVKQGQVILALSNPDAEIKPQDAMTAGASFAADGKSINNALAFPGIFRGALDARASRINNRMLI AAAKAIASHAEEGELVPGILNRNVHLAVAEAVARAAAETGVIKPRN
Sequences:
>Translated_446_residues MNIEKGFDKIVKTLRVMITDQPGYLGRLTTAIGSEGGNIGDIRLISSGLTHNIREITVYVDNDQHLEMILKAVAAVEGVI VEEVIDRVQQVHEGGKIAVRSRVEIKTIGDVRKIYTPGVASICRQIQQKPRLADTYTAIGNTVAIVTNGTAILGLGDIGP VAGMPVMEGKAVLFDHLVGISGVPILLRSKNVDHIVDTIWHLAPTFGAIKLEDIAAPDCFEIERRLVEMLDIPVMHDDQH GTAVVVLASLLNATRFTGTRLQNATIGIIGLGAAGTGIAKLLMAYGVKKVVGTDLNPGAMEMLQTLGGEPTNLAGVMERA QVVIATTGCPGLIKPDMVKQGQVILALSNPDAEIKPQDAMTAGASFAADGKSINNALAFPGIFRGALDARASRINNRMLI AAAKAIASHAEEGELVPGILNRNVHLAVAEAVARAAAETGVIKPRN >Mature_446_residues MNIEKGFDKIVKTLRVMITDQPGYLGRLTTAIGSEGGNIGDIRLISSGLTHNIREITVYVDNDQHLEMILKAVAAVEGVI VEEVIDRVQQVHEGGKIAVRSRVEIKTIGDVRKIYTPGVASICRQIQQKPRLADTYTAIGNTVAIVTNGTAILGLGDIGP VAGMPVMEGKAVLFDHLVGISGVPILLRSKNVDHIVDTIWHLAPTFGAIKLEDIAAPDCFEIERRLVEMLDIPVMHDDQH GTAVVVLASLLNATRFTGTRLQNATIGIIGLGAAGTGIAKLLMAYGVKKVVGTDLNPGAMEMLQTLGGEPTNLAGVMERA QVVIATTGCPGLIKPDMVKQGQVILALSNPDAEIKPQDAMTAGASFAADGKSINNALAFPGIFRGALDARASRINNRMLI AAAKAIASHAEEGELVPGILNRNVHLAVAEAVARAAAETGVIKPRN
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family [H]
Homologues:
Organism=Escherichia coli, GI1788806, Length=389, Percent_Identity=38.8174807197943, Blast_Score=229, Evalue=2e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M [H]
EC number: =1.1.1.38 [H]
Molecular weight: Translated: 47109; Mature: 47109
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIEKGFDKIVKTLRVMITDQPGYLGRLTTAIGSEGGNIGDIRLISSGLTHNIREITVYV CCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEE DNDQHLEMILKAVAAVEGVIVEEVIDRVQQVHEGGKIAVRSRVEIKTIGDVRKIYTPGVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHCCCCHH SICRQIQQKPRLADTYTAIGNTVAIVTNGTAILGLGDIGPVAGMPVMEGKAVLFDHLVGI HHHHHHHHCCCCHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCC SGVPILLRSKNVDHIVDTIWHLAPTFGAIKLEDIAAPDCFEIERRLVEMLDIPVMHDDQH CCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEECCCC GTAVVVLASLLNATRFTGTRLQNATIGIIGLGAAGTGIAKLLMAYGVKKVVGTDLNPGAM CHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCHHHHHHHHHHHCHHHHHCCCCCHHHH EMLQTLGGEPTNLAGVMERAQVVIATTGCPGLIKPDMVKQGQVILALSNPDAEIKPQDAM HHHHHHCCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH TAGASFAADGKSINNALAFPGIFRGALDARASRINNRMLIAAAKAIASHAEEGELVPGIL HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCHHH NRNVHLAVAEAVARAAAETGVIKPRN CCCEEEHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MNIEKGFDKIVKTLRVMITDQPGYLGRLTTAIGSEGGNIGDIRLISSGLTHNIREITVYV CCCHHHHHHHHHHHHHEECCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCCCEEEEEEEE DNDQHLEMILKAVAAVEGVIVEEVIDRVQQVHEGGKIAVRSRVEIKTIGDVRKIYTPGVA CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEHHHHHHHCCCCHH SICRQIQQKPRLADTYTAIGNTVAIVTNGTAILGLGDIGPVAGMPVMEGKAVLFDHLVGI HHHHHHHHCCCCHHHHHHCCCEEEEEECCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCC SGVPILLRSKNVDHIVDTIWHLAPTFGAIKLEDIAAPDCFEIERRLVEMLDIPVMHDDQH CCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCEECCCC GTAVVVLASLLNATRFTGTRLQNATIGIIGLGAAGTGIAKLLMAYGVKKVVGTDLNPGAM CHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCHHHHHHHHHHHCHHHHHCCCCCHHHH EMLQTLGGEPTNLAGVMERAQVVIATTGCPGLIKPDMVKQGQVILALSNPDAEIKPQDAM HHHHHHCCCCCHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHH TAGASFAADGKSINNALAFPGIFRGALDARASRINNRMLIAAAKAIASHAEEGELVPGIL HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEHHHHHHHHCCCCCCCCCHHH NRNVHLAVAEAVARAAAETGVIKPRN CCCEEEHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 8501064; 10903309 [H]