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The map label for this gene is 39997311

Identifier: 39997311

GI number: 39997311

Start: 2428173

End: 2428997

Strand: Reverse

Name: 39997311

Synonym: GSU2213

Alternate gene names: NA

Gene position: 2428997-2428173 (Counterclockwise)

Preceding gene: 39997312

Following gene: 39997310

Centisome position: 63.68

GC content: 60.48

Gene sequence:

>825_bases
ATGTCAGTGGAAGAGGAAAAGGGGCTGCTGGCGCGGGCCGATGAGTTTCTTCAGGCATTCAAGAAGGGGGCGGAGTTCAC
CCAGGAGCTGCTCCGGGAAAATGAGCGTCTCCGGTTCCGGACCCTCCAACTGGAGGCCGACCAGAAGGGCGAGGGGGTAG
CGGCGGCCTTGGCCGTCGAGAACCGCAAACTTGCCGCCCGGGTAGAGGAGCTTGAGCGGGAAATAGCGGAAATCATCGGC
CAGATCCGGCAGATCGAGGCGGAGAATAACGATTTCGCCGCCCGCTACGTGGAGATCGAGGAGGAGAACAACAATCTGGC
CAATCTCTATATTGCCAGCTACCAGCTCCACTCGACCCTCGATTTTAGCGAAGTGCTCCAGATAATCACCGAGATCATCA
TCAACCTGATTGGTGCCGAGGAGTTCGCCGTGATGCTCGTCGATGAGAAGACCGGCAGCCTGGACGCCGTCGCCGCCGAA
GGGATCTCGCTGGAGGAACTTCCCCGGGTGCGCCTGGGCGAGGGCGTCATCGGTATCGCTGCCGGCACCGGCGAGAACTA
CTTCGCCGAGGGGCCGGAGACCTACGAGCGGGACCTGCTGCGGCCGATGGTCTGCATTCCGCTGAAGATCAAGGAGCACG
TCATCGGCGTCATCGCCATCTACAAGCTTCTGATCCAGAAAAAGAGCTTCGCCAGCGTCGACTACGAGTTGTTCACGCTC
CTGGCGGGGCACGCGGCCACGGCTATTTTCAGCTCCCGCATCTATTCGGACTCCGAGCGCAAGCTCTCCACCATGCAGGG
CTTCATCAATCTGCTGACCACGTAG

Upstream 100 bases:

>100_bases
CCGCATGTCCCGCGAGATTATACAGCGGTGCGGTCTTCTCAGCGACGTCGATTGACCGATCCCTCTTAGCCTGAGTGCTG
AAGGGGCATAGGAGCGAGAC

Downstream 100 bases:

>100_bases
CAGTTGTGTTCTGAGGAGACGTTCATCATGGCGGAAAAAACCGTACTGATCGTGGAAGATTCACCGACCATGCGACAACT
GATCGCCTTTGCCCTGAAGC

Product: GAF domain-containing protein

Products: NA

Alternate protein names: GAF Sensor Protein; GAF Domain Protein

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSVEEEKGLLARADEFLQAFKKGAEFTQELLRENERLRFRTLQLEADQKGEGVAAALAVENRKLAARVEELEREIAEIIG
QIRQIEAENNDFAARYVEIEEENNNLANLYIASYQLHSTLDFSEVLQIITEIIINLIGAEEFAVMLVDEKTGSLDAVAAE
GISLEELPRVRLGEGVIGIAAGTGENYFAEGPETYERDLLRPMVCIPLKIKEHVIGVIAIYKLLIQKKSFASVDYELFTL
LAGHAATAIFSSRIYSDSERKLSTMQGFINLLTT

Sequences:

>Translated_274_residues
MSVEEEKGLLARADEFLQAFKKGAEFTQELLRENERLRFRTLQLEADQKGEGVAAALAVENRKLAARVEELEREIAEIIG
QIRQIEAENNDFAARYVEIEEENNNLANLYIASYQLHSTLDFSEVLQIITEIIINLIGAEEFAVMLVDEKTGSLDAVAAE
GISLEELPRVRLGEGVIGIAAGTGENYFAEGPETYERDLLRPMVCIPLKIKEHVIGVIAIYKLLIQKKSFASVDYELFTL
LAGHAATAIFSSRIYSDSERKLSTMQGFINLLTT
>Mature_273_residues
SVEEEKGLLARADEFLQAFKKGAEFTQELLRENERLRFRTLQLEADQKGEGVAAALAVENRKLAARVEELEREIAEIIGQ
IRQIEAENNDFAARYVEIEEENNNLANLYIASYQLHSTLDFSEVLQIITEIIINLIGAEEFAVMLVDEKTGSLDAVAAEG
ISLEELPRVRLGEGVIGIAAGTGENYFAEGPETYERDLLRPMVCIPLKIKEHVIGVIAIYKLLIQKKSFASVDYELFTLL
AGHAATAIFSSRIYSDSERKLSTMQGFINLLTT

Specific function: Unknown

COG id: COG2203

COG function: function code T; FOG: GAF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30602; Mature: 30471

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEEEKGLLARADEFLQAFKKGAEFTQELLRENERLRFRTLQLEADQKGEGVAAALAVE
CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEC
NRKLAARVEELEREIAEIIGQIRQIEAENNDFAARYVEIEEENNNLANLYIASYQLHSTL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEHHCCC
DFSEVLQIITEIIINLIGAEEFAVMLVDEKTGSLDAVAAEGISLEELPRVRLGEGVIGIA
CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCHHHCCCCCCCCCEEEEE
AGTGENYFAEGPETYERDLLRPMVCIPLKIKEHVIGVIAIYKLLIQKKSFASVDYELFTL
ECCCCCCCCCCCHHHHHHHHCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LAGHAATAIFSSRIYSDSERKLSTMQGFINLLTT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SVEEEKGLLARADEFLQAFKKGAEFTQELLRENERLRFRTLQLEADQKGEGVAAALAVE
CCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEC
NRKLAARVEELEREIAEIIGQIRQIEAENNDFAARYVEIEEENNNLANLYIASYQLHSTL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEEEHHCCC
DFSEVLQIITEIIINLIGAEEFAVMLVDEKTGSLDAVAAEGISLEELPRVRLGEGVIGIA
CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHCCCCHHHCCCCCCCCCEEEEE
AGTGENYFAEGPETYERDLLRPMVCIPLKIKEHVIGVIAIYKLLIQKKSFASVDYELFTL
ECCCCCCCCCCCHHHHHHHHCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LAGHAATAIFSSRIYSDSERKLSTMQGFINLLTT
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA