Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is 39997250
Identifier: 39997250
GI number: 39997250
Start: 2368743
End: 2369699
Strand: Direct
Name: 39997250
Synonym: GSU2152
Alternate gene names: NA
Gene position: 2368743-2369699 (Clockwise)
Preceding gene: 39997249
Following gene: 39997251
Centisome position: 62.1
GC content: 54.13
Gene sequence:
>957_bases ATGAACGCACCAGCTCAAATCATTCCCATCAGTCCCACCGCATCATCCCTAACTCACCACGCCGTCAACATCAGTGAACT GAAGGCCCAGGTAAACCTGATCCAGTACGTCATGCGTGACGTCATGAAATCAGGCGAGCACTACGGCACCATTCCCGGCT GCGGAGACAAAGCAGTTCTTCTCAAACCGGGCGCCGAAAAGCTCATGCTTACCTTCAGACTGGCGAACGACGTGGAGGTG GAAACCATCGATATGCATCTCGGCCATCGTGAGTATCGCATCAAGGTGACGCTCTACTCACCTGCAGGCCAGCGTCTTGG TACCGGTGTCGGTTCATGCTCGACCATGGAAAGCAAGTATCGTTTCCGTGTCGGGCCAGTTGAACTGACGAATAAACCGG TACCGAAGGAATACTGGGATATTCGCAAGGAGAACCCGGCAAAGGCGCAAGAGATCATTGGTGGACGCGGCTTCAGCGCA AAAAAGGATGACAGCGGCAACTGGAAAATTGCCAGGCAGGGAGAAAAAGTCGAACACGACAATCCTGCCGATTTCTACAA CACCTGCCTGAAAATGGCCAAGAAGCGGGGCTTGGTGGATGCAGTACTTACCTCAACCGCTGCTTCGGACATATTCACCC AGGACATTGAGGAAGATCCTGACCTTTACGGACAGACGGAACACAACGGAGGAAACAGTGCCGGCAACACCAGCACTACC TCCGGGACTTCACAAACTGCCAAACCGGACAGTGCCCCATCATCCAACGAAGCCGAACCTGTTTCGACTTCCGAGATCAT CGGGTATCTGACCGCCAAAGGGATCAGGATGGAACTCTCCGCAGACGAATCGGAGATCTCCGCCTTCCCGGACTTCAACG ACACCTCAGCCCGCCAATGGCTGAAAGACCACGGATTCAAATGGGACGGCAAAGGCAAATGCTGGCAGTACCGGTAG
Upstream 100 bases:
>100_bases AACCACAACCAACAGTCCCACGGGGAGACATTACCAAATCCCCAAAGGGATTGGTCTGTCTTCTCTGTCGGACACAACCC ACAGAAAAGGAGACAGACAG
Downstream 100 bases:
>100_bases TGCCTGACGTTCCAGACTGAACTCCACTCACAACCTACCTCAGCAGGGAGACAACGACTTTCTCCCTACCGGGGGTGTCT TGTCTCTTCTGCCGGGTACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 318; Mature: 318
Protein sequence:
>318_residues MNAPAQIIPISPTASSLTHHAVNISELKAQVNLIQYVMRDVMKSGEHYGTIPGCGDKAVLLKPGAEKLMLTFRLANDVEV ETIDMHLGHREYRIKVTLYSPAGQRLGTGVGSCSTMESKYRFRVGPVELTNKPVPKEYWDIRKENPAKAQEIIGGRGFSA KKDDSGNWKIARQGEKVEHDNPADFYNTCLKMAKKRGLVDAVLTSTAASDIFTQDIEEDPDLYGQTEHNGGNSAGNTSTT SGTSQTAKPDSAPSSNEAEPVSTSEIIGYLTAKGIRMELSADESEISAFPDFNDTSARQWLKDHGFKWDGKGKCWQYR
Sequences:
>Translated_318_residues MNAPAQIIPISPTASSLTHHAVNISELKAQVNLIQYVMRDVMKSGEHYGTIPGCGDKAVLLKPGAEKLMLTFRLANDVEV ETIDMHLGHREYRIKVTLYSPAGQRLGTGVGSCSTMESKYRFRVGPVELTNKPVPKEYWDIRKENPAKAQEIIGGRGFSA KKDDSGNWKIARQGEKVEHDNPADFYNTCLKMAKKRGLVDAVLTSTAASDIFTQDIEEDPDLYGQTEHNGGNSAGNTSTT SGTSQTAKPDSAPSSNEAEPVSTSEIIGYLTAKGIRMELSADESEISAFPDFNDTSARQWLKDHGFKWDGKGKCWQYR >Mature_318_residues MNAPAQIIPISPTASSLTHHAVNISELKAQVNLIQYVMRDVMKSGEHYGTIPGCGDKAVLLKPGAEKLMLTFRLANDVEV ETIDMHLGHREYRIKVTLYSPAGQRLGTGVGSCSTMESKYRFRVGPVELTNKPVPKEYWDIRKENPAKAQEIIGGRGFSA KKDDSGNWKIARQGEKVEHDNPADFYNTCLKMAKKRGLVDAVLTSTAASDIFTQDIEEDPDLYGQTEHNGGNSAGNTSTT SGTSQTAKPDSAPSSNEAEPVSTSEIIGYLTAKGIRMELSADESEISAFPDFNDTSARQWLKDHGFKWDGKGKCWQYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34933; Mature: 34933
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAPAQIIPISPTASSLTHHAVNISELKAQVNLIQYVMRDVMKSGEHYGTIPGCGDKAVL CCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE LKPGAEKLMLTFRLANDVEVETIDMHLGHREYRIKVTLYSPAGQRLGTGVGSCSTMESKY ECCCCCEEEEEEEECCCCEEEEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCHHHCCCC RFRVGPVELTNKPVPKEYWDIRKENPAKAQEIIGGRGFSAKKDDSGNWKIARQGEKVEHD EEEECCEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC NPADFYNTCLKMAKKRGLVDAVLTSTAASDIFTQDIEEDPDLYGQTEHNGGNSAGNTSTT CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SGTSQTAKPDSAPSSNEAEPVSTSEIIGYLTAKGIRMELSADESEISAFPDFNDTSARQW CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCHHHHHH LKDHGFKWDGKGKCWQYR HHHCCCEECCCCCCCCCC >Mature Secondary Structure MNAPAQIIPISPTASSLTHHAVNISELKAQVNLIQYVMRDVMKSGEHYGTIPGCGDKAVL CCCCCEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE LKPGAEKLMLTFRLANDVEVETIDMHLGHREYRIKVTLYSPAGQRLGTGVGSCSTMESKY ECCCCCEEEEEEEECCCCEEEEEEEECCCEEEEEEEEEECCCCHHHCCCCCCCHHHCCCC RFRVGPVELTNKPVPKEYWDIRKENPAKAQEIIGGRGFSAKKDDSGNWKIARQGEKVEHD EEEECCEEECCCCCCHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCC NPADFYNTCLKMAKKRGLVDAVLTSTAASDIFTQDIEEDPDLYGQTEHNGGNSAGNTSTT CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC SGTSQTAKPDSAPSSNEAEPVSTSEIIGYLTAKGIRMELSADESEISAFPDFNDTSARQW CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCHHHHHH LKDHGFKWDGKGKCWQYR HHHCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA