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The map label for this gene is ssb-1 [H]

Identifier: 39997249

GI number: 39997249

Start: 2368214

End: 2368633

Strand: Direct

Name: ssb-1 [H]

Synonym: GSU2151

Alternate gene names: 39997249

Gene position: 2368214-2368633 (Clockwise)

Preceding gene: 39997248

Following gene: 39997250

Centisome position: 62.09

GC content: 53.33

Gene sequence:

>420_bases
ATGGCAAGTCTGAATCGCGTGGAACTCATCGGCAACCTGGGACGTGACCCTGAAATCAGGTACACACCAGGAGGCACCGC
TGTCGCAAGTTTTTCACTCGCGACCAGTGAGAAGGTCAAGAACAAGAGCGGCGAATGGGAAACCCGCACCGAGTGGCACA
ACATCGTCCTCTACGCACGTCTCGCAGAAGTAGCTGGCGAGTATTTGTCGAAAGGGAAAAGTGTCTACCTCGACGGTAAA
CTCAAGACCCGCAAATGGCAAGATCGGGACGGTAAAGATCGCTACACAACCGAGATCATCGGCGACAAGCTTCTTATGCT
TGGTAGTAAAAATGGCAGCATTCCTGACGGGAGTGACGACCAGCCATCAAACAGCCAGGCACATGAGGACATTCCGCACG
ATGACACCGATCCGTTCTAG

Upstream 100 bases:

>100_bases
CGGGTACTTTCACCACATCCCGACCGGGAGACGATCTGTTCTCTCCCCACCGGGACGGACAAAAGTCTCCTTGCTTCGGG
AAAACCAACAAGGAGGCAGT

Downstream 100 bases:

>100_bases
GTAACAAGCAACCACAACCAACAGTCCCACGGGGAGACATTACCAAATCCCCAAAGGGATTGGTCTGTCTTCTCTGTCGG
ACACAACCCACAGAAAAGGA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYARLAEVAGEYLSKGKSVYLDGK
LKTRKWQDRDGKDRYTTEIIGDKLLMLGSKNGSIPDGSDDQPSNSQAHEDIPHDDTDPF

Sequences:

>Translated_139_residues
MASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYARLAEVAGEYLSKGKSVYLDGK
LKTRKWQDRDGKDRYTTEIIGDKLLMLGSKNGSIPDGSDDQPSNSQAHEDIPHDDTDPF
>Mature_138_residues
ASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYARLAEVAGEYLSKGKSVYLDGKL
KTRKWQDRDGKDRYTTEIIGDKLLMLGSKNGSIPDGSDDQPSNSQAHEDIPHDDTDPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=115, Percent_Identity=36.5217391304348, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1790494, Length=118, Percent_Identity=55.0847457627119, Blast_Score=134, Evalue=2e-33,
Organism=Drosophila melanogaster, GI85725234, Length=110, Percent_Identity=32.7272727272727, Blast_Score=70, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24647376, Length=110, Percent_Identity=32.7272727272727, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15469; Mature: 15338

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYAR
CCCCHHHHHHHCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LAEVAGEYLSKGKSVYLDGKLKTRKWQDRDGKDRYTTEIIGDKLLMLGSKNGSIPDGSDD
HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCCC
QPSNSQAHEDIPHDDTDPF
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASLNRVELIGNLGRDPEIRYTPGGTAVASFSLATSEKVKNKSGEWETRTEWHNIVLYAR
CCCHHHHHHHCCCCCCCEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
LAEVAGEYLSKGKSVYLDGKLKTRKWQDRDGKDRYTTEIIGDKLLMLGSKNGSIPDGSDD
HHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHCCEEEEEECCCCCCCCCCCC
QPSNSQAHEDIPHDDTDPF
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]