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The map label for this gene is cspC [H]

Identifier: 39997003

GI number: 39997003

Start: 2083466

End: 2083666

Strand: Direct

Name: cspC [H]

Synonym: GSU1905

Alternate gene names: 39997003

Gene position: 2083466-2083666 (Clockwise)

Preceding gene: 39997002

Following gene: 39997020

Centisome position: 54.62

GC content: 54.73

Gene sequence:

>201_bases
ATGGCTATCGGAAGAGTTAAGTGGTTCAACGACGCCAAGGGTTTTGGGTTCATCGAGCAGGACAATGGCGAGGATGTGTT
CGTACATTTCTCCGCCATCCAGCAGGATGGTTTCAAGTCCCTCGCCGAGGGTGAGCAAGTTTCCTTCGACGTGGTGAATG
GCCCCAAGGGGCTTCAGGCCGCCAACGTCAAGAAGGCCTAA

Upstream 100 bases:

>100_bases
CCCTCGACTCTCGCGGTTTTCCTGCCTCAAAACTCCGGAAACTTAAGCAGCATCCCCACGAAGTCCGGCACAGATCCGGA
GGCACAAAGGAGGTAGGACA

Downstream 100 bases:

>100_bases
ACAAGGCCCTCATAGCTTAACCGACAAAAAGCCCGCTGGTTCATCCAGCGGGCTTTTTGTGTTTAATCGCGTTATAATAC
GCTGCACTTGACGGCGACCG

Product: cold shock domain-contain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 65

Protein sequence:

>66_residues
MAIGRVKWFNDAKGFGFIEQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQAANVKKA

Sequences:

>Translated_66_residues
MAIGRVKWFNDAKGFGFIEQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQAANVKKA
>Mature_65_residues
AIGRVKWFNDAKGFGFIEQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQAANVKKA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI156415990, Length=66, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=51.5151515151515, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=65.5737704918033, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1789979, Length=62, Percent_Identity=64.5161290322581, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=62.2950819672131, Blast_Score=75, Evalue=6e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=54.6875, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787834, Length=61, Percent_Identity=59.0163934426229, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787839, Length=61, Percent_Identity=59.0163934426229, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=55.7377049180328, Blast_Score=68, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24658520, Length=62, Percent_Identity=50, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7189; Mature: 7058

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIGRVKWFNDAKGFGFIEQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQA
CCCCCEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHCCCCCEEEEECCCCCCCCC
ANVKKA
CCCCCC
>Mature Secondary Structure 
AIGRVKWFNDAKGFGFIEQDNGEDVFVHFSAIQQDGFKSLAEGEQVSFDVVNGPKGLQA
CCCCEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCHHHCCCCCEEEEECCCCCCCCC
ANVKKA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]