| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is rad50 [H]
Identifier: 39996824
GI number: 39996824
Start: 1889279
End: 1891720
Strand: Direct
Name: rad50 [H]
Synonym: GSU1725
Alternate gene names: 39996824
Gene position: 1889279-1891720 (Clockwise)
Preceding gene: 39996823
Following gene: 39996826
Centisome position: 49.53
GC content: 60.28
Gene sequence:
>2442_bases ATGCGGATACTCTCCATCCATCTGAAGAACATAAAATCCCACCGCGACACGGAGCTGACCTTCTCCGCCGGTATCAATGT CCTTTCCGGCCCCAACGGCGTCGGCAAGAGCACGGTGTTCGAGGCGATCGGCTACGCTCTGTTCGGGGTGGACGCCCGGG ACTTCGTCTCCAACGTGGACCGGTTTCTCTCCATCGGCACCAAGAAGGGAGAGATCGCCGTCGCCTTCTGCACGGATGCC GGAGAAACCTGGCGGGTGACCCGAACCGTCGGCACCCCGGCCAAGTGGCTCCTGGCCAGGGAGCAGGGTGGGGCCTTCGA GGTGGAGGAGCACGCCCGAATCGAAGAAACCGAGGCCCGCATCGCCGAACTCCTCGGTCTCGACAACGGCCGTCCCCTGG CGGAGCAGTTCAAACTGGTGATCGGCCCCTTCCAGAACGAATTCCTCGGCCCATTCGTCATCAAGCAGCCCACCAAACGC CAGGAGGCCTTCGACGAGATCCTCGGCATCGATGCCTGGCGCAAGACCTACAAGAGCACCAGCTCGCTCCTCTCCGCTGT GCAGGAAAAAATCAAGATTATCGCCGTGGAGATTGAGGCGAAAGAAGCCCAGGTTGCGGTCCTGCCCGAGCGTGAGGATG AACTGGCAAAGATAAAAACCGATGCCGAGGCGCTCCGGAAAGTCCTTTCATCACAAGCGGATGCCCTGCGGGACGTGGAG AAGCAGCTGGTCGAGCTCGATGACCAGGAAAAGGGAATAGCCGCGCTCCAGGCCGAGATCCAGATCCTCGTTAACCGCAT CACTGATGGCGAAGGCAAGATCAAGGATCAGGGGCAAAGGGTAGGGGAGGCGGAGAAGGCCGGCGGGGTTCTGGAGCAGA CGCGGGCGGGCAAGGAGGCTTTCGAACGGGCCGAATCGCGGCTGGCGGAGTTGGTGAGTAAAGACAAACAGCGTCGAGAG GTCGAGAAGGACGTTACCCGCCTTGAAAATGAGACCCAGCGCCTGACGCAGGCAGTCGAGCATGAACAGAAGGAGATTGA AGGGGAGGGGCGCCGCCTCAGAGAGGAAGAGGACGCCCTTGCCAAAGCCCGGAACGAACTAGAGCCGGACCGGAAGGTGG TGGACACGGCTGGCCGGCTGCCAGGACTTCGCGACGAGATCAATCGCGTTCGCTCGGAAAAGGGACTCCTGGAAGGGCGC CGCATCGGACTTCTGGAGGGGCAGGAGAAGCTTGGCGAAGGGACATGCCCCTTTTTCAAGGAGCCCTGCCGGAACGTGGC CGGAACCACGCCGAAAGACGTGTTCACCACGAGGATTGCCGAGCTTGACCGGAAGATGCAGGCACTCACCGAGGCCTTGG GCAAACTATCCGTAGAGGTGGCTGACGCCGAGGCGGCCGAGAAACAGCTTGCCGCCCTGACAGTCCGGAGCCAGGAACTG CACAAACAGACGATGGGCTTGGTTGAACGCCGCGCCAGAAATGAAAAACGCGTCGCTACGTTGCAGACATTGTCAACGCA ACAGATCGAAGCGGCCACCCGGGCTAAAGCGCGCAGGGACGATCTTCAGGTCTTTGCCGGCCTTGACCATGAGATTGAAC GTGCAACCGCAGAGCGGGGCCGGTTCCAGGCCGACCGCGATGCCTACCATGCCCACGAAAAGGATGCCCTGGATCTGGAT AACCGGCGCCAGACCCTGGAGAAGATGCTCCGGCTCCTGGATGAGTTGCAGAAGCAACTCATCGGGAAGAAAGAGGAACT TATCCGGCTTCAGGAAACCTATAAACCGGGCCAGCACAAGGAAGCCCGTGACCAGAAAGACCGGCTGGTAGCGCAAGTCG CCTCGCTAGGCCAGCAGATCGAAAATCTGGAGAAGGACCGGAAGCGCCTTGAGGATGAAATCGGCAAACTGAAGCTGCTT AAAGACGAGATTGGGCGGAAGCAGGCCGAGAGGAACTCCTTCGAACAGAAGGAGAAACTCGTCAAATTCCTCCGCAACCA GGTCTTCAAGAACGTCTCAGCCCAACTCTCGGAGCGGTTCCGGGAGGAAATCAGCCTCCGCGCCGACCGGATCTACCGCA CCATTGCCGAGGCCGATGAGGAACTGGTCTGGTCCGAGAACTACCAGATCGTGCTGCGAGACATGACGGACGGCGTTGTT CGCGAACGGAGCGACGACCAGCTCTCCGGCGGCCAGACCATGAGCGCCGTAGTGGCCCTGCGGCTGGCACTGCTTCAGAC CATCGGCGCCCGGATCGCATTTTTTGACGAACCGACATCCAACCTTGATGCCTCGCGGCGGGAAAACCTGGCCACCGCAT TCCGCGCCATCGATGTAGGCCGGGAAGAGGTCACCGAACACTGGTACGACCAACTGTTCCTCATCAGCCATGATGTAGCC TTCACCGAGATTACGGATCAGATGATTCAACTGGGCGAGTGA
Upstream 100 bases:
>100_bases ATGAACTGGTGCGGCTCTCCCTGGCGATCCGCGACCAGGTGCTCAAGGGGGAGACGGACGGCGAAGAGTTGCTGGGACTT CTGATGCGGGAGCCTGCCTG
Downstream 100 bases:
>100_bases TCTCGGTGATCACGCGAACACAACCACATACCAGTGTAACGGCATATGGCTACTGAACCCGGCTCCGATCAATGCCTTTA GTCCGGCGCCGGCAAAAGGG
Product: nuclease SbcCD subunit C
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFGVDARDFVSNVDRFLSIGTKKGEIAVAFCTDA GETWRVTRTVGTPAKWLLAREQGGAFEVEEHARIEETEARIAELLGLDNGRPLAEQFKLVIGPFQNEFLGPFVIKQPTKR QEAFDEILGIDAWRKTYKSTSSLLSAVQEKIKIIAVEIEAKEAQVAVLPEREDELAKIKTDAEALRKVLSSQADALRDVE KQLVELDDQEKGIAALQAEIQILVNRITDGEGKIKDQGQRVGEAEKAGGVLEQTRAGKEAFERAESRLAELVSKDKQRRE VEKDVTRLENETQRLTQAVEHEQKEIEGEGRRLREEEDALAKARNELEPDRKVVDTAGRLPGLRDEINRVRSEKGLLEGR RIGLLEGQEKLGEGTCPFFKEPCRNVAGTTPKDVFTTRIAELDRKMQALTEALGKLSVEVADAEAAEKQLAALTVRSQEL HKQTMGLVERRARNEKRVATLQTLSTQQIEAATRAKARRDDLQVFAGLDHEIERATAERGRFQADRDAYHAHEKDALDLD NRRQTLEKMLRLLDELQKQLIGKKEELIRLQETYKPGQHKEARDQKDRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLL KDEIGRKQAERNSFEQKEKLVKFLRNQVFKNVSAQLSERFREEISLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVV RERSDDQLSGGQTMSAVVALRLALLQTIGARIAFFDEPTSNLDASRRENLATAFRAIDVGREEVTEHWYDQLFLISHDVA FTEITDQMIQLGE
Sequences:
>Translated_813_residues MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFGVDARDFVSNVDRFLSIGTKKGEIAVAFCTDA GETWRVTRTVGTPAKWLLAREQGGAFEVEEHARIEETEARIAELLGLDNGRPLAEQFKLVIGPFQNEFLGPFVIKQPTKR QEAFDEILGIDAWRKTYKSTSSLLSAVQEKIKIIAVEIEAKEAQVAVLPEREDELAKIKTDAEALRKVLSSQADALRDVE KQLVELDDQEKGIAALQAEIQILVNRITDGEGKIKDQGQRVGEAEKAGGVLEQTRAGKEAFERAESRLAELVSKDKQRRE VEKDVTRLENETQRLTQAVEHEQKEIEGEGRRLREEEDALAKARNELEPDRKVVDTAGRLPGLRDEINRVRSEKGLLEGR RIGLLEGQEKLGEGTCPFFKEPCRNVAGTTPKDVFTTRIAELDRKMQALTEALGKLSVEVADAEAAEKQLAALTVRSQEL HKQTMGLVERRARNEKRVATLQTLSTQQIEAATRAKARRDDLQVFAGLDHEIERATAERGRFQADRDAYHAHEKDALDLD NRRQTLEKMLRLLDELQKQLIGKKEELIRLQETYKPGQHKEARDQKDRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLL KDEIGRKQAERNSFEQKEKLVKFLRNQVFKNVSAQLSERFREEISLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVV RERSDDQLSGGQTMSAVVALRLALLQTIGARIAFFDEPTSNLDASRRENLATAFRAIDVGREEVTEHWYDQLFLISHDVA FTEITDQMIQLGE >Mature_813_residues MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFGVDARDFVSNVDRFLSIGTKKGEIAVAFCTDA GETWRVTRTVGTPAKWLLAREQGGAFEVEEHARIEETEARIAELLGLDNGRPLAEQFKLVIGPFQNEFLGPFVIKQPTKR QEAFDEILGIDAWRKTYKSTSSLLSAVQEKIKIIAVEIEAKEAQVAVLPEREDELAKIKTDAEALRKVLSSQADALRDVE KQLVELDDQEKGIAALQAEIQILVNRITDGEGKIKDQGQRVGEAEKAGGVLEQTRAGKEAFERAESRLAELVSKDKQRRE VEKDVTRLENETQRLTQAVEHEQKEIEGEGRRLREEEDALAKARNELEPDRKVVDTAGRLPGLRDEINRVRSEKGLLEGR RIGLLEGQEKLGEGTCPFFKEPCRNVAGTTPKDVFTTRIAELDRKMQALTEALGKLSVEVADAEAAEKQLAALTVRSQEL HKQTMGLVERRARNEKRVATLQTLSTQQIEAATRAKARRDDLQVFAGLDHEIERATAERGRFQADRDAYHAHEKDALDLD NRRQTLEKMLRLLDELQKQLIGKKEELIRLQETYKPGQHKEARDQKDRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLL KDEIGRKQAERNSFEQKEKLVKFLRNQVFKNVSAQLSERFREEISLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVV RERSDDQLSGGQTMSAVVALRLALLQTIGARIAFFDEPTSNLDASRRENLATAFRAIDVGREEVTEHWYDQLFLISHDVA FTEITDQMIQLGE
Specific function: Involved in DNA double-strand break repair (DSBR). The rad50/mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of mre11 by unwinding and
COG id: COG0419
COG function: function code L; ATPase involved in DNA repair
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 zinc-hook domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR009053 - InterPro: IPR022982 - InterPro: IPR007517 - InterPro: IPR003395 - InterPro: IPR018159 - InterPro: IPR013134 [H]
Pfam domain/function: PF04423 Rad50_zn_hook; PF02463 SMC_N [H]
EC number: NA
Molecular weight: Translated: 91976; Mature: 91976
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFGVDARDFVSNVD CCEEEEEHHHHHCCCCCCEEHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH RFLSIGTKKGEIAVAFCTDAGETWRVTRTVGTPAKWLLAREQGGAFEVEEHARIEETEAR HHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHECCCCCCEECHHHHHHHHHHHH IAELLGLDNGRPLAEQFKLVIGPFQNEFLGPFVIKQPTKRQEAFDEILGIDAWRKTYKST HHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCHHCCCCCHHHHHHHHHHCCHHHHHHHHHH SSLLSAVQEKIKIIAVEIEAKEAQVAVLPEREDELAKIKTDAEALRKVLSSQADALRDVE HHHHHHHHHHHEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQLVELDDQEKGIAALQAEIQILVNRITDGEGKIKDQGQRVGEAEKAGGVLEQTRAGKEA HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHH FERAESRLAELVSKDKQRREVEKDVTRLENETQRLTQAVEHEQKEIEGEGRRLREEEDAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AKARNELEPDRKVVDTAGRLPGLRDEINRVRSEKGLLEGRRIGLLEGQEKLGEGTCPFFK HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHH EPCRNVAGTTPKDVFTTRIAELDRKMQALTEALGKLSVEVADAEAAEKQLAALTVRSQEL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHH HKQTMGLVERRARNEKRVATLQTLSTQQIEAATRAKARRDDLQVFAGLDHEIERATAERG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC RFQADRDAYHAHEKDALDLDNRRQTLEKMLRLLDELQKQLIGKKEELIRLQETYKPGQHK CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC EARDQKDRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLLKDEIGRKQAERNSFEQKEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKFLRNQVFKNVSAQLSERFREEISLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHH RERSDDQLSGGQTMSAVVALRLALLQTIGARIAFFDEPTSNLDASRRENLATAFRAIDVG HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC REEVTEHWYDQLFLISHDVAFTEITDQMIQLGE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MRILSIHLKNIKSHRDTELTFSAGINVLSGPNGVGKSTVFEAIGYALFGVDARDFVSNVD CCEEEEEHHHHHCCCCCCEEHHHCCCEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH RFLSIGTKKGEIAVAFCTDAGETWRVTRTVGTPAKWLLAREQGGAFEVEEHARIEETEAR HHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHECCCCCCEECHHHHHHHHHHHH IAELLGLDNGRPLAEQFKLVIGPFQNEFLGPFVIKQPTKRQEAFDEILGIDAWRKTYKST HHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCHHCCCCCHHHHHHHHHHCCHHHHHHHHHH SSLLSAVQEKIKIIAVEIEAKEAQVAVLPEREDELAKIKTDAEALRKVLSSQADALRDVE HHHHHHHHHHHEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQLVELDDQEKGIAALQAEIQILVNRITDGEGKIKDQGQRVGEAEKAGGVLEQTRAGKEA HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHH FERAESRLAELVSKDKQRREVEKDVTRLENETQRLTQAVEHEQKEIEGEGRRLREEEDAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH AKARNELEPDRKVVDTAGRLPGLRDEINRVRSEKGLLEGRRIGLLEGQEKLGEGTCPFFK HHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCHHH EPCRNVAGTTPKDVFTTRIAELDRKMQALTEALGKLSVEVADAEAAEKQLAALTVRSQEL HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHH HKQTMGLVERRARNEKRVATLQTLSTQQIEAATRAKARRDDLQVFAGLDHEIERATAERG HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC RFQADRDAYHAHEKDALDLDNRRQTLEKMLRLLDELQKQLIGKKEELIRLQETYKPGQHK CCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCC EARDQKDRLVAQVASLGQQIENLEKDRKRLEDEIGKLKLLKDEIGRKQAERNSFEQKEKL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKFLRNQVFKNVSAQLSERFREEISLRADRIYRTIAEADEELVWSENYQIVLRDMTDGVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEHHHHHHH RERSDDQLSGGQTMSAVVALRLALLQTIGARIAFFDEPTSNLDASRRENLATAFRAIDVG HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCC REEVTEHWYDQLFLISHDVAFTEITDQMIQLGE HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11930014 [H]