Click here to switch to the map view.

The map label for this gene is 39996820

Identifier: 39996820

GI number: 39996820

Start: 1884525

End: 1885277

Strand: Direct

Name: 39996820

Synonym: GSU1721

Alternate gene names: NA

Gene position: 1884525-1885277 (Clockwise)

Preceding gene: 39996819

Following gene: 39996821

Centisome position: 49.41

GC content: 64.14

Gene sequence:

>753_bases
ATGAGTAAACCCGGAGCCGAACTTGAGGAGGTTTTCTCCTCGGTCCAGGGGGAGGGGATGCTCATTGGCCTGCGCCAGGT
ATTCATCCGATTCCGGGGGTGCAACCTGACCTGCGACTACTGCGACACCCCGGCGGGTACGCCGGCCGAGCCGTGTCGCA
TCGAGCAGACCCCGGGCCGGCGCGACTTCGTTCCCGCGGACAACCCGGTCTCCCTCGATCGGGTGGCGGCGCTGGTGGAA
GGGTGGCAGCGGGGCTGGCCCGGCGTGCACGATTCCATCAGCATCACCGGCGGCGAACCGCTCCTGAGGCACGATATTCT
CATGCAGTGGCTGCCGGTCCTGAGAGAACATCTTCCCGTCTACCTGGAAACCAACGGCGTCATGCACGCGGCCCTGGGAC
TGGTGATCAACCATGTCGACATCATCGGCATGGACATCAAAATTCCGTCCACCTCGGGCTGCACCGACCTCTGGGACGAC
CACCGCCAATTCCTCGAAATAGCGAACACCCGCCGGGCGTTCATCAAAATCGTCGTGGGGGAGGAAACGGAAGACTGGGA
AATCACCCGGGCCAGCGAGATCATAGCCGGCGTGAATCGGGACATTCCCCTGATCCTCCAGCCGGTCACCCGGGCCGGCG
ACACCCTCGGCATCAAGCCGGTCAAGGCGCTGGAGTTGCAGGAGCTGGCCTGCCGGTACCTGGCCGAGGTCCGGATCATC
CCCCAGACCCACCGGTTCATGGGGCAGCTGTAA

Upstream 100 bases:

>100_bases
CGCTACCTCTACCACGAGCTGTCCCGCCGCCTCAATGACGGCAACGTGACAGTTGAGAGCATCACTGTCTGGGAATCGGA
CAACGCAGCGGCCACCTACT

Downstream 100 bases:

>100_bases
GTCTGCGCGGGAGGAGCGGCACATGATCATCGAAACCATGACCATGGTCGAATTCGAAGAAGGGCTCCGGGCCACCCGGA
CCGTGCTGGTCCCGTTCGGC

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSKPGAELEEVFSSVQGEGMLIGLRQVFIRFRGCNLTCDYCDTPAGTPAEPCRIEQTPGRRDFVPADNPVSLDRVAALVE
GWQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREHLPVYLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDD
HRQFLEIANTRRAFIKIVVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEVRII
PQTHRFMGQL

Sequences:

>Translated_250_residues
MSKPGAELEEVFSSVQGEGMLIGLRQVFIRFRGCNLTCDYCDTPAGTPAEPCRIEQTPGRRDFVPADNPVSLDRVAALVE
GWQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREHLPVYLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDD
HRQFLEIANTRRAFIKIVVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEVRII
PQTHRFMGQL
>Mature_249_residues
SKPGAELEEVFSSVQGEGMLIGLRQVFIRFRGCNLTCDYCDTPAGTPAEPCRIEQTPGRRDFVPADNPVSLDRVAALVEG
WQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREHLPVYLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDDH
RQFLEIANTRRAFIKIVVGEETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEVRIIP
QTHRFMGQL

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27880; Mature: 27748

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPGAELEEVFSSVQGEGMLIGLRQVFIRFRGCNLTCDYCDTPAGTPAEPCRIEQTPGR
CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCEECCCCCC
RDFVPADNPVSLDRVAALVEGWQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREHLPV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCE
YLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDDHRQFLEIANTRRAFIKIVVG
EEECCCHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEC
EETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEVRII
CCCCCCCHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PQTHRFMGQL
CHHHHHHCCC
>Mature Secondary Structure 
SKPGAELEEVFSSVQGEGMLIGLRQVFIRFRGCNLTCDYCDTPAGTPAEPCRIEQTPGR
CCCCHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCEEECCCCCCCCCCCCCCEECCCCCC
RDFVPADNPVSLDRVAALVEGWQRGWPGVHDSISITGGEPLLRHDILMQWLPVLREHLPV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCE
YLETNGVMHAALGLVINHVDIIGMDIKIPSTSGCTDLWDDHRQFLEIANTRRAFIKIVVG
EEECCCHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEC
EETEDWEITRASEIIAGVNRDIPLILQPVTRAGDTLGIKPVKALELQELACRYLAEVRII
CCCCCCCHHHHHHHHHCCCCCCCEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PQTHRFMGQL
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]