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The map label for this gene is smpB [H]

Identifier: 39996809

GI number: 39996809

Start: 1873660

End: 1874121

Strand: Direct

Name: smpB [H]

Synonym: GSU1709

Alternate gene names: 39996809

Gene position: 1873660-1874121 (Clockwise)

Preceding gene: 39996808

Following gene: 39996811

Centisome position: 49.12

GC content: 51.52

Gene sequence:

>462_bases
ATGGGAGAAAAGCTGATCTGCAACAACAAGAAAGCGTTTCACGATTTCTTCATAGAAGAGCGTTTTGAAGCGGGAATGGT
GCTGAAGGGGACCGAGGTGAAATCCCTTCGCGACGGCAAGGCAAACCTCAATGATTCCTTTGCCTTGATCCGTAACGGTG
AAATCTTTCTGCACAATCTCCACATCAATCCCTACGCGTTCGGCAACCGGGAGAACCACGATCCTGACAGGCTGCGCAAG
CTCCTGATGCATAAGAAAGAGATCGAAAAGCTCTTCGGCAAGATCCGCGAAAAGGGATACTCGGTTGTGCCGTTGCGCCT
CTACTTCAAGAATGGCCTCGCCAAGGTCGAGTTGGGACTTGCCAAGGGCAAGAAGCTCTACGACAAGCGGGAAGACATGA
AGAAGAAAGACCAGTCGAGGGAGATGGCCCAGGCCCTCAGAGAAAAGAGCAAGAGTCACTGA

Upstream 100 bases:

>100_bases
CGACCGGACAGAACCCCGCTAATTCCCCCTCAAATAGCGGACAACCATAGTCTTTTTTACTCCTTGCAATGATTTCACCA
TATCTGTTAGTATCATTTGC

Downstream 100 bases:

>100_bases
ACAGAGTTTACAAGGGGGTGTACAGGTTTCGACGGGGATAGGAAGCTGATGGTTGCATGCCGAGGTCCGGGCTGGCCTCG
TTAAAAAGCCCGGGGCGAAT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MGEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLHINPYAFGNRENHDPDRLRK
LLMHKKEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSREMAQALREKSKSH

Sequences:

>Translated_153_residues
MGEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLHINPYAFGNRENHDPDRLRK
LLMHKKEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSREMAQALREKSKSH
>Mature_152_residues
GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLHINPYAFGNRENHDPDRLRKL
LMHKKEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGLAKGKKLYDKREDMKKKDQSREMAQALREKSKSH

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=151, Percent_Identity=49.0066225165563, Blast_Score=149, Evalue=7e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- InterPro:   IPR020081
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17876; Mature: 17745

Theoretical pI: Translated: 10.45; Mature: 10.45

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNL
CCCCEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCEEEEECCEEEEEEE
HINPYAFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGL
ECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHH
AKGKKLYDKREDMKKKDQSREMAQALREKSKSH
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNL
CCCEEECCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCEEEEECCEEEEEEE
HINPYAFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFKNGLAKVELGL
ECCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEHHH
AKGKKLYDKREDMKKKDQSREMAQALREKSKSH
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA