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The map label for this gene is yebA [H]

Identifier: 39995606

GI number: 39995606

Start: 532095

End: 532850

Strand: Reverse

Name: yebA [H]

Synonym: GSU0499

Alternate gene names: 39995606

Gene position: 532850-532095 (Counterclockwise)

Preceding gene: 39995616

Following gene: 39995600

Centisome position: 13.97

GC content: 62.17

Gene sequence:

>756_bases
GTGCGCTGCCATGTCACTATTCAAAGACGTTCTGCATACGCTTACTCGTGGCGCAATCAAGGAAGACAGGCCAATCATGG
CCTTCATGCTCGGTCTCGCCGCATTGTCCGTCAGCCTCATCATTCTCGGGCTGACCAGGTAAAAACCGCCGTGACCCGTC
GTATCCTCGCTATACTCCTGTCTCTTTCCCTGGCCGTGGGCCTGGGAAGTTCGCCTGCCGCAGCGGCTCGCCGCTTGCCC
GTGGACGGCGGCACCGTCACCTCCGGCATCGGCTGGAGGATCGACCCCTTCGGCAGCGGCCGCCAGGTCTACCATCACGG
GGTCGACATCGCCGTGCCCGAAGGCACGCCGGTCTATCCCACCGAGCGGGGTATGGTCCTCCATGCGGGACTCTACAAGG
GGTACGGCAACCTGGTTGCAGTGGACCACGGTAACGGCTATGTTTCCCTGTATGGGCACAACGCGACACTTCTCGTCACG
GAAGGACAAAAAGTCGACACGTCCACGGTTATCGCCCTGTCGGGCAACACCGGGCGCTCAACCGGCCCCCATGTTCACTA
CGAGGTCCGCCAAATCCCCGGGTACACACAAAAAGCACGGGACCGGATGGAGGAACAACTGAAAGTGCTGGTGGCAGAGC
GGATCGAGGGATGGGTTGAAGACCACGTGGCGACCGCCCAGGGTGACGGAACCGATACCGGCCCCCGAGACCCCTTGGCC
GAGCTGGCGCTCCCCTCAGACGACGGTTTCCAGTAA

Upstream 100 bases:

>100_bases
TGCCTTGAAATGACAAGTTAAAAGTGGCGATAGGGTTGATTTCGGCCCGGCACTCATGGCATATATGTTGCTCTGATATG
TTCAGCCTCACGCAATCGGA

Downstream 100 bases:

>100_bases
CGGCGGGTCACAGACTTTTGCGATAGCGCACCAGCAGGTAGATGCAGAACGCACCGACGACGACCATGGCGGCCACCAGC
CACCACGACACCTCCCTCTC

Product: M23/M37 peptidase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MRCHVTIQRRSAYAYSWRNQGRQANHGLHARSRRIVRQPHHSRADQVKTAVTRRILAILLSLSLAVGLGSSPAAAARRLP
VDGGTVTSGIGWRIDPFGSGRQVYHHGVDIAVPEGTPVYPTERGMVLHAGLYKGYGNLVAVDHGNGYVSLYGHNATLLVT
EGQKVDTSTVIALSGNTGRSTGPHVHYEVRQIPGYTQKARDRMEEQLKVLVAERIEGWVEDHVATAQGDGTDTGPRDPLA
ELALPSDDGFQ

Sequences:

>Translated_251_residues
MRCHVTIQRRSAYAYSWRNQGRQANHGLHARSRRIVRQPHHSRADQVKTAVTRRILAILLSLSLAVGLGSSPAAAARRLP
VDGGTVTSGIGWRIDPFGSGRQVYHHGVDIAVPEGTPVYPTERGMVLHAGLYKGYGNLVAVDHGNGYVSLYGHNATLLVT
EGQKVDTSTVIALSGNTGRSTGPHVHYEVRQIPGYTQKARDRMEEQLKVLVAERIEGWVEDHVATAQGDGTDTGPRDPLA
ELALPSDDGFQ
>Mature_251_residues
MRCHVTIQRRSAYAYSWRNQGRQANHGLHARSRRIVRQPHHSRADQVKTAVTRRILAILLSLSLAVGLGSSPAAAARRLP
VDGGTVTSGIGWRIDPFGSGRQVYHHGVDIAVPEGTPVYPTERGMVLHAGLYKGYGNLVAVDHGNGYVSLYGHNATLLVT
EGQKVDTSTVIALSGNTGRSTGPHVHYEVRQIPGYTQKARDRMEEQLKVLVAERIEGWVEDHVATAQGDGTDTGPRDPLA
ELALPSDDGFQ

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=97, Percent_Identity=50.5154639175258, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI87082174, Length=87, Percent_Identity=37.9310344827586, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789099, Length=98, Percent_Identity=39.7959183673469, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI87082297, Length=85, Percent_Identity=40, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 27279; Mature: 27279

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCHVTIQRRSAYAYSWRNQGRQANHGLHARSRRIVRQPHHSRADQVKTAVTRRILAILL
CEEEEEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SLSLAVGLGSSPAAAARRLPVDGGTVTSGIGWRIDPFGSGRQVYHHGVDIAVPEGTPVYP
HHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCCCCCEEEECCCEEECCCCCCCCC
TERGMVLHAGLYKGYGNLVAVDHGNGYVSLYGHNATLLVTEGQKVDTSTVIALSGNTGRS
CCCCEEEEEEHHCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCEEEEEEECCCCCC
TGPHVHYEVRQIPGYTQKARDRMEEQLKVLVAERIEGWVEDHVATAQGDGTDTGPRDPLA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHH
ELALPSDDGFQ
HHCCCCCCCCC
>Mature Secondary Structure
MRCHVTIQRRSAYAYSWRNQGRQANHGLHARSRRIVRQPHHSRADQVKTAVTRRILAILL
CEEEEEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SLSLAVGLGSSPAAAARRLPVDGGTVTSGIGWRIDPFGSGRQVYHHGVDIAVPEGTPVYP
HHHHHHCCCCCCHHHHHCCCCCCCEEECCCCEEECCCCCCCEEEECCCEEECCCCCCCCC
TERGMVLHAGLYKGYGNLVAVDHGNGYVSLYGHNATLLVTEGQKVDTSTVIALSGNTGRS
CCCCEEEEEEHHCCCCCEEEEECCCCEEEEEECCEEEEEECCCCCCCEEEEEEECCCCCC
TGPHVHYEVRQIPGYTQKARDRMEEQLKVLVAERIEGWVEDHVATAQGDGTDTGPRDPLA
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHH
ELALPSDDGFQ
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]