Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is 39995428
Identifier: 39995428
GI number: 39995428
Start: 350163
End: 351002
Strand: Reverse
Name: 39995428
Synonym: GSU0319
Alternate gene names: NA
Gene position: 351002-350163 (Counterclockwise)
Preceding gene: 39995429
Following gene: 39995425
Centisome position: 9.2
GC content: 64.52
Gene sequence:
>840_bases ATGACGGCACAGCGCTGGCTCGCCTGGGGCGCCGGCATCATCGCCGGCCTGCTCCTCATCCTAATCTTCACCCTTCTTCT GGTCCCCTCGCGGGAACTGGAACAGCTGACCGTCCGCTGGTTTGCCCGGCAGGGTTACGACTTCAGCGCGTCCGACTTCG GCAAGGCGTTTCCGCTGGGCGTTTCCGCCCGGGGTGTTACCATTGCCGACAACCGGGGGCCGCTCCTGCGGTTGGACACT GTCCGGACGCGACTCGAACTCCTGCCGCTTTTGGCGGGAAAAGTCTCCGTTGACGTGGACGGCTCTATCGGCGCGGGACA GTTCGACGGCACCTTCCGGCCCCGGGCCGGCACGGGGGTTTTCTCCGCACGTGACGTTCGCCTGGAGGACATCCCCTTTT TCCGGACCGCCACCGACGCCGATATCAAAGGAGTGATGACAGCTGACGCCACCCTTGCCGGCACGGGGCGATCCAAAGGG GGCGAAGTGAAACTGGCGGTGAAGGGAGCGCACATCCGCGGAGCAACGATCAGCGGTGTTCCTCTGCCGGACGCCGTGTA CGAAACGGTGCGCGGCATGGTCAGGGTAGCCGGCGGCAGGGCAACCATCGACAGCTTCTCCCTCCAGGGAGAGGACGTCT ACGTCCGCCTGAGCGGCACCATGCCCCTCATGGCTCCCATGGGGAACTCGCCCCTCAATCTGTCCCTGGAGCTGATGCCC CGGCCCGCATTCCTGGACCGGCAGAAGCTCGTCTTCACCCTTCTGGCAAAATACCTGATAACGCCGGGTCACTACCGGCT GCCGATCCGGGGAACCCTCTCAAAGCCTCTTCTTCAGTAA
Upstream 100 bases:
>100_bases TTATCAGAAAAGCATTGCTGCGCACCCGCTTCGACGACCCGTCAAAACTCGACCTGACTCTTACCGTGGCACTGCTGCGC GGCGCACCTCAGGGGGCGCG
Downstream 100 bases:
>100_bases CGCCCTGCCTCCACTGCCGTCCACACTCGCACAGATCATTCTTTTCGCGCCAGCGCCAGCAGCCCTTGCACCCGTTCAAC CACCGGCGGGTGGGAATAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MTAQRWLAWGAGIIAGLLLILIFTLLLVPSRELEQLTVRWFARQGYDFSASDFGKAFPLGVSARGVTIADNRGPLLRLDT VRTRLELLPLLAGKVSVDVDGSIGAGQFDGTFRPRAGTGVFSARDVRLEDIPFFRTATDADIKGVMTADATLAGTGRSKG GEVKLAVKGAHIRGATISGVPLPDAVYETVRGMVRVAGGRATIDSFSLQGEDVYVRLSGTMPLMAPMGNSPLNLSLELMP RPAFLDRQKLVFTLLAKYLITPGHYRLPIRGTLSKPLLQ
Sequences:
>Translated_279_residues MTAQRWLAWGAGIIAGLLLILIFTLLLVPSRELEQLTVRWFARQGYDFSASDFGKAFPLGVSARGVTIADNRGPLLRLDT VRTRLELLPLLAGKVSVDVDGSIGAGQFDGTFRPRAGTGVFSARDVRLEDIPFFRTATDADIKGVMTADATLAGTGRSKG GEVKLAVKGAHIRGATISGVPLPDAVYETVRGMVRVAGGRATIDSFSLQGEDVYVRLSGTMPLMAPMGNSPLNLSLELMP RPAFLDRQKLVFTLLAKYLITPGHYRLPIRGTLSKPLLQ >Mature_278_residues TAQRWLAWGAGIIAGLLLILIFTLLLVPSRELEQLTVRWFARQGYDFSASDFGKAFPLGVSARGVTIADNRGPLLRLDTV RTRLELLPLLAGKVSVDVDGSIGAGQFDGTFRPRAGTGVFSARDVRLEDIPFFRTATDADIKGVMTADATLAGTGRSKGG EVKLAVKGAHIRGATISGVPLPDAVYETVRGMVRVAGGRATIDSFSLQGEDVYVRLSGTMPLMAPMGNSPLNLSLELMPR PAFLDRQKLVFTLLAKYLITPGHYRLPIRGTLSKPLLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30051; Mature: 29919
Theoretical pI: Translated: 10.66; Mature: 10.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAQRWLAWGAGIIAGLLLILIFTLLLVPSRELEQLTVRWFARQGYDFSASDFGKAFPLG CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC VSARGVTIADNRGPLLRLDTVRTRLELLPLLAGKVSVDVDGSIGAGQFDGTFRPRAGTGV CCCCCEEEECCCCCEEEEHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCCCCCC FSARDVRLEDIPFFRTATDADIKGVMTADATLAGTGRSKGGEVKLAVKGAHIRGATISGV EEECCCEECCCCCEECCCCCCCCEEEEECEEEECCCCCCCCEEEEEEECCEEECCEECCC PLPDAVYETVRGMVRVAGGRATIDSFSLQGEDVYVRLSGTMPLMAPMGNSPLNLSLELMP CCCHHHHHHHHHHHEECCCCEEEEEEEECCCEEEEEEECCCEEEECCCCCCCEEEEEEEC RPAFLDRQKLVFTLLAKYLITPGHYRLPIRGTLSKPLLQ CCCHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC >Mature Secondary Structure TAQRWLAWGAGIIAGLLLILIFTLLLVPSRELEQLTVRWFARQGYDFSASDFGKAFPLG CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCC VSARGVTIADNRGPLLRLDTVRTRLELLPLLAGKVSVDVDGSIGAGQFDGTFRPRAGTGV CCCCCEEEECCCCCEEEEHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCEECCCCCCCC FSARDVRLEDIPFFRTATDADIKGVMTADATLAGTGRSKGGEVKLAVKGAHIRGATISGV EEECCCEECCCCCEECCCCCCCCEEEEECEEEECCCCCCCCEEEEEEECCEEECCEECCC PLPDAVYETVRGMVRVAGGRATIDSFSLQGEDVYVRLSGTMPLMAPMGNSPLNLSLELMP CCCHHHHHHHHHHHEECCCCEEEEEEEECCCEEEEEEECCCEEEECCCCCCCEEEEEEEC RPAFLDRQKLVFTLLAKYLITPGHYRLPIRGTLSKPLLQ CCCHHCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA