| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39995351
Identifier: 39995351
GI number: 39995351
Start: 248506
End: 249798
Strand: Reverse
Name: 39995351
Synonym: GSU0241
Alternate gene names: NA
Gene position: 249798-248506 (Counterclockwise)
Preceding gene: 39995352
Following gene: 39995350
Centisome position: 6.55
GC content: 67.05
Gene sequence:
>1293_bases ATGAAGATTCTCTTCGTGGCGCCGGGCTGGCCCCGGGGCAGGCTCTGGGGCGAACTGGGCTTCAAGTTCCCGTCCCTTGC CCTGGCCGCCCTGGCTGCGGTTACTCCGCCCGAGTGGGACGCGGCCCTCTGCGACGAGAGCCGGGAGACCATCGACTTCA ATGCCCCGTGCGATCTGGTGGCCATCACCGCCATGACCCCCCAGGCGCCCCGGGCCTACGAGATCGCCGCCGGCTTCCGC GCCCGGGGAAAAACCGTCGTCATGGGGGGATTCCACGCCAGCAATCTCCCGGACGAGGCCCTCGGCCACGTGGACGCCGT GGTGGTGGGCGAAGGGGAACTCTCCTGGCCCCTGCTGCTGGCGGATTTCCAGGCGGGCCGGCTCCAGCGCCTCTACCGGT CCCCGGGGCTCCTGCCCATGGCATCGATCCCGGTGGCCCGGCGCGAGATCTTCGCCGGCAAGGGGTATCTGCTGACCAAC ACCCTCCAGACCACCCGGGGTTGCCCCTTTGACTGCGAATTCTGCTCGGTCACCGCTTTTTACGGCCGCAAGTACCGGGA GCGCCCCGTCGAAGCGGTGCTGGCCGAGCTGGAAACCCTGCGCAAGGCCAATTCCTTTGCCTTTTTCGTGGACGACAACC TGGTGGCCGACCGCCGCTACGCCCTGCCCCTGTTCCGGGGGATGAAGGGAATGGGATTCAAGTGGCTCTCCCATGCCCCC ATCGATTTCGCCGGTGATGAGGAGTTGATGCGGGCCGCCGGCGAATCGGGCTGCATCGGCATGTTCGTGGGATTCGAGTC CCTGGACCAGGAGGCCCTGGCCGCCATGGGAAAGGTGACCAACAGCTCCTCCGCGTTCCTGGACCAGGCCCGGAAATTCC GGGACCACGGCATCGGCATCCTCGGGTCCTTTGTCCTGGGCTACGACGGCGACACCCCGGACTCCTTCGGACGCATCCTC CGCTTCTGCGAAGAGGCCCGGATCGAGGCGGCCATCTTCCCGATCCTCACCCCCTACCCCGGTACCGCCGTACGCCGGCG GCTGGAGGCCGAGGGGCGGATCACCTCCAACGACTGGCGCGACTACGACATGGGGCACGTGACCTTCCGCCCCACGGGAA TGACCGCCCGGGAGCTCCAGGATGGGCACGACTGGCTCAACCGCTCCTTCTACTCCTTCGGCTCCATGTGGCGGCGCATC GGCAAGCTGCACCGCTCGGTACAGGTCTTCGGCCCCATGAACCTGGGGTTCCGCAGCGCCATCCGAAAATCCGACAAAAC GAAAGCCTCCTGA
Upstream 100 bases:
>100_bases TGGAGAAGGATTTCGGCGTGGTGGTCCCCGACGCCGCCACCGGCACCAAGGTCTTCGCGTCGGTCCGAAGCATGGCCGAC CATATCGCCGCCAACCGGAA
Downstream 100 bases:
>100_bases CCATGATCTGCTTCATGTTTCCCGGACAACCCCTCGCGCCCCCGGTCGAATTCCCGGAGGACGCGGATTTCGAGGCCATT GCCCTTTTGACGCGGCAGCG
Product: P-methylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 430
Protein sequence:
>430_residues MKILFVAPGWPRGRLWGELGFKFPSLALAALAAVTPPEWDAALCDESRETIDFNAPCDLVAITAMTPQAPRAYEIAAGFR ARGKTVVMGGFHASNLPDEALGHVDAVVVGEGELSWPLLLADFQAGRLQRLYRSPGLLPMASIPVARREIFAGKGYLLTN TLQTTRGCPFDCEFCSVTAFYGRKYRERPVEAVLAELETLRKANSFAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAP IDFAGDEELMRAAGESGCIGMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRDHGIGILGSFVLGYDGDTPDSFGRIL RFCEEARIEAAIFPILTPYPGTAVRRRLEAEGRITSNDWRDYDMGHVTFRPTGMTARELQDGHDWLNRSFYSFGSMWRRI GKLHRSVQVFGPMNLGFRSAIRKSDKTKAS
Sequences:
>Translated_430_residues MKILFVAPGWPRGRLWGELGFKFPSLALAALAAVTPPEWDAALCDESRETIDFNAPCDLVAITAMTPQAPRAYEIAAGFR ARGKTVVMGGFHASNLPDEALGHVDAVVVGEGELSWPLLLADFQAGRLQRLYRSPGLLPMASIPVARREIFAGKGYLLTN TLQTTRGCPFDCEFCSVTAFYGRKYRERPVEAVLAELETLRKANSFAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAP IDFAGDEELMRAAGESGCIGMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRDHGIGILGSFVLGYDGDTPDSFGRIL RFCEEARIEAAIFPILTPYPGTAVRRRLEAEGRITSNDWRDYDMGHVTFRPTGMTARELQDGHDWLNRSFYSFGSMWRRI GKLHRSVQVFGPMNLGFRSAIRKSDKTKAS >Mature_430_residues MKILFVAPGWPRGRLWGELGFKFPSLALAALAAVTPPEWDAALCDESRETIDFNAPCDLVAITAMTPQAPRAYEIAAGFR ARGKTVVMGGFHASNLPDEALGHVDAVVVGEGELSWPLLLADFQAGRLQRLYRSPGLLPMASIPVARREIFAGKGYLLTN TLQTTRGCPFDCEFCSVTAFYGRKYRERPVEAVLAELETLRKANSFAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAP IDFAGDEELMRAAGESGCIGMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRDHGIGILGSFVLGYDGDTPDSFGRIL RFCEEARIEAAIFPILTPYPGTAVRRRLEAEGRITSNDWRDYDMGHVTFRPTGMTARELQDGHDWLNRSFYSFGSMWRRI GKLHRSVQVFGPMNLGFRSAIRKSDKTKAS
Specific function: Unknown
COG id: COG1032
COG function: function code C; Fe-S oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B12-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006158 - InterPro: IPR006638 - InterPro: IPR005839 - InterPro: IPR007197 [H]
Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]
EC number: NA
Molecular weight: Translated: 47670; Mature: 47670
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKILFVAPGWPRGRLWGELGFKFPSLALAALAAVTPPEWDAALCDESRETIDFNAPCDLV CEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCEEECCCCCCEE AITAMTPQAPRAYEIAAGFRARGKTVVMGGFHASNLPDEALGHVDAVVVGEGELSWPLLL EEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCCCCCEEE ADFQAGRLQRLYRSPGLLPMASIPVARREIFAGKGYLLTNTLQTTRGCPFDCEFCSVTAF ECCCHHHHHHHHHCCCCCEECCCCHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHH YGRKYRERPVEAVLAELETLRKANSFAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAP HHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEECCCHHHHHHHHCCCCCCCHHHCCCC IDFAGDEELMRAAGESGCIGMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRDHGIGI CCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE LGSFVLGYDGDTPDSFGRILRFCEEARIEAAIFPILTPYPGTAVRRRLEAEGRITSNDWR EEHEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC DYDMGHVTFRPTGMTARELQDGHDWLNRSFYSFGSMWRRIGKLHRSVQVFGPMNLGFRSA CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH IRKSDKTKAS HHHCCCCCCC >Mature Secondary Structure MKILFVAPGWPRGRLWGELGFKFPSLALAALAAVTPPEWDAALCDESRETIDFNAPCDLV CEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHCCCCCEEECCCCCCEE AITAMTPQAPRAYEIAAGFRARGKTVVMGGFHASNLPDEALGHVDAVVVGEGELSWPLLL EEEECCCCCCCCEEECCCCCCCCCEEEEECCCCCCCCHHHHCCEEEEEEECCCCCCCEEE ADFQAGRLQRLYRSPGLLPMASIPVARREIFAGKGYLLTNTLQTTRGCPFDCEFCSVTAF ECCCHHHHHHHHHCCCCCEECCCCHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHH YGRKYRERPVEAVLAELETLRKANSFAFFVDDNLVADRRYALPLFRGMKGMGFKWLSHAP HHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEECCCHHHHHHHHCCCCCCCHHHCCCC IDFAGDEELMRAAGESGCIGMFVGFESLDQEALAAMGKVTNSSSAFLDQARKFRDHGIGI CCCCCCHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCE LGSFVLGYDGDTPDSFGRILRFCEEARIEAAIFPILTPYPGTAVRRRLEAEGRITSNDWR EEHEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCC DYDMGHVTFRPTGMTARELQDGHDWLNRSFYSFGSMWRRIGKLHRSVQVFGPMNLGFRSA CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHH IRKSDKTKAS HHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]