Click here to switch to the map view.

The map label for this gene is 39995297

Identifier: 39995297

GI number: 39995297

Start: 200953

End: 201300

Strand: Reverse

Name: 39995297

Synonym: GSU0187

Alternate gene names: NA

Gene position: 201300-200953 (Counterclockwise)

Preceding gene: 39995298

Following gene: 39995296

Centisome position: 5.28

GC content: 64.66

Gene sequence:

>348_bases
GTGAACCGGAGGGCGAGAAAGCCGGCTGTCCCGCGTCCCGCGCAGGAAACGGCACGCCGTGCCGTCATCACGCTGATCCG
CAACCACCCCCTCTCGGCCAGGGATATCTCGGGGCAGGCACACATGACGGAAAAAGATGTCTACAGCCACCTGGAGCATA
TCCGCCTCAGCATTCACGCCACCGGGGAGTTCCTGGAAATAACCCCAGCCGAGTGCCGCTCCTGCGGCTTCGTGTTCTCC
AAACGCGACCGCCTCACCCCGCCCGGCAGATGTCCCGTCTGCCGGGACGAGTTCATCTTCGAGCCGCTGTTCGCAATCCG
CCGGCGGGAGGATCGCAGCAGGGAATAG

Upstream 100 bases:

>100_bases
TCCTGCTCCTGCAGGGCATCTTCGCCGTGGCCATGGTGGTGATTGAATGCCCCTCCGGCTACTTCAGAGACCGGATCAGC
TACCGGCGGAGCAAGGCCCC

Downstream 100 bases:

>100_bases
GTCATCTTCCCGCATCCCTCCCGCCGCGACAGTGATACAATGGAACCATGGAAAGGAGATGATCGTCATGTCGCAAGGCG
AAAAAATTCATGAGCCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: Helix-Turn-Helix/Zinc Ribbon Transcriptional Regulator; Transcription Regulator

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MNRRARKPAVPRPAQETARRAVITLIRNHPLSARDISGQAHMTEKDVYSHLEHIRLSIHATGEFLEITPAECRSCGFVFS
KRDRLTPPGRCPVCRDEFIFEPLFAIRRREDRSRE

Sequences:

>Translated_115_residues
MNRRARKPAVPRPAQETARRAVITLIRNHPLSARDISGQAHMTEKDVYSHLEHIRLSIHATGEFLEITPAECRSCGFVFS
KRDRLTPPGRCPVCRDEFIFEPLFAIRRREDRSRE
>Mature_115_residues
MNRRARKPAVPRPAQETARRAVITLIRNHPLSARDISGQAHMTEKDVYSHLEHIRLSIHATGEFLEITPAECRSCGFVFS
KRDRLTPPGRCPVCRDEFIFEPLFAIRRREDRSRE

Specific function: Unknown

COG id: COG3357

COG function: function code K; Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13351; Mature: 13351

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRARKPAVPRPAQETARRAVITLIRNHPLSARDISGQAHMTEKDVYSHLEHIRLSIHA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEC
TGEFLEITPAECRSCGFVFSKRDRLTPPGRCPVCRDEFIFEPLFAIRRREDRSRE
CCCEEEECHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNRRARKPAVPRPAQETARRAVITLIRNHPLSARDISGQAHMTEKDVYSHLEHIRLSIHA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHEEEEEC
TGEFLEITPAECRSCGFVFSKRDRLTPPGRCPVCRDEFIFEPLFAIRRREDRSRE
CCCEEEECHHHHHHCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA