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The map label for this gene is nusB

Identifier: 38233925

GI number: 38233925

Start: 1352866

End: 1353414

Strand: Reverse

Name: nusB

Synonym: DIP1339

Alternate gene names: 38233925

Gene position: 1353414-1352866 (Counterclockwise)

Preceding gene: 38233926

Following gene: 38233921

Centisome position: 54.38

GC content: 49.18

Gene sequence:

>549_bases
TTGAAGTCTCAAGAGACTAGGTCTTCTTGGAAACGTCGTGGTAGCCGCTACAAAGCGCGTAGGCGTGCGGTGGATATTCT
TTTTGAGGCAGAAATGCGGGATATCGACCCCGTTGCTATCGTTGAAGACCGAGTTGTGCTTTCGCGACTAAACGGAACAG
ACGTGAATCAAGTTCCTAGCTACACTAAAGAAATTGTTTCTGGTGCAGCTATGGAGCTGGACCGACTCGATGAACTGATT
GCAGCCCATTTGGCCGAGGATTGGTCGTTGGAGCGGATCATGACTGTTGATCGCGCAATCCTTCGCGTCAGTGTCTGGGA
ATTGATCTTCAATCCCGATGTTCCTTTGGCTACCGCAATTATCGAAGGCGTAGAACTAGCGAGTGAATATTCAACGGATG
TATCACCAGCATACGTTCACGCGCTTCTCGACAGTATCGCTAAGAATATTGACGAATATCGCGCCGGCTCGGTGACACCT
GTTGAAAACAGCGAAGCCGAAGCGGCTGGTTATCCAGTTGAAGAATCAATCGAAGAAGACTCACAGTAG

Upstream 100 bases:

>100_bases
ACGGTTCCTACCTATCTCGCGTAAACAACTAATTGTGAGCGGTAACAAAGTGAACCCTGAAGATGAAAATACCTCTCAGA
CGAAAAAACCGGCTGAGGAA

Downstream 100 bases:

>100_bases
TCTTTCTTGAAAAAATGTGGTGGTCGCACGTGATTGTGCGACCACCACATTATTTATATCGCCGTTGCTTTAGCCCAACT
GTGTTGTAAATCAAGCACGT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMELDRLDELI
AAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTP
VENSEAEAAGYPVEESIEEDSQ

Sequences:

>Translated_182_residues
MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMELDRLDELI
AAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTP
VENSEAEAAGYPVEESIEEDSQ
>Mature_182_residues
MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPSYTKEIVSGAAMELDRLDELI
AAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAIIEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTP
VENSEAEAAGYPVEESIEEDSQ

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CORDI (Q6NH08)

Other databases:

- EMBL:   BX248357
- RefSeq:   NP_939692.1
- HSSP:   P95020
- ProteinModelPortal:   Q6NH08
- SMR:   Q6NH08
- GeneID:   2648782
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1339
- NMPDR:   fig|257309.1.peg.1283
- HOGENOM:   HBG734409
- OMA:   DDSPSFV
- PhylomeDB:   Q6NH08
- ProtClustDB:   PRK00202
- BioCyc:   CDIP257309:DIP1339-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 20382; Mature: 20382

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
YTKEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPVENSEAEAAGYPVEESIEED
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC
SQ
CC
>Mature Secondary Structure
MKSQETRSSWKRRGSRYKARRRAVDILFEAEMRDIDPVAIVEDRVVLSRLNGTDVNQVPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHH
YTKEIVSGAAMELDRLDELIAAHLAEDWSLERIMTVDRAILRVSVWELIFNPDVPLATAI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
IEGVELASEYSTDVSPAYVHALLDSIAKNIDEYRAGSVTPVENSEAEAAGYPVEESIEED
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCC
SQ
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910