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The map label for this gene is ybbK [C]

Identifier: 38233861

GI number: 38233861

Start: 1283795

End: 1284922

Strand: Reverse

Name: ybbK [C]

Synonym: DIP1276

Alternate gene names: 38233861

Gene position: 1284922-1283795 (Counterclockwise)

Preceding gene: 38233862

Following gene: 38233858

Centisome position: 51.63

GC content: 47.16

Gene sequence:

>1128_bases
GTGATAGTTCTTGCAGTTATCATGGTGCTTTTTGCAATTGTTATTGCTAAATCCATTGTAATTATTCCGCAAGGTGAAGC
CGCCGTTGTCGAGCGCCTAGGTCGGTACACCAAGACTGTTGCAGGCGGGATTAGTTTGTTAGTACCGTTTATCGACAGAG
TACGGGCGAAAGTAGACACCCGTGAACGGGTTGTGTCCTTCCCACCACAAGCTGTTATCACTCAAGACAATCTTACTGTT
GCTATTGATACTGTCGTCACTTTTCAAATCAATGATGCAGCAAAAGCAATTTATGGTGTTGACAACTACATTGTAGGCGT
AGAACAAATTTCGGTTGCGACTCTCCGTGATGTAGTTGGCGGAATGACATTAGAGGAGACTCTAACTTCTCGAGAAGTAA
TCAATCGTCGATTGCGCGGTGAGCTCGATGCGGCTACTACAAAGTGGGGATTAAGAATTAGCCGAGTAGAGCTCAAAGCG
ATTGATCCTCCTCCATCGATCCAGCAATCGATGGAAATGCAGATGAAAGCTGATCGTGAAAAACGCGCCATGATTCTGAC
CGCTGAGGGACGCCGCGAATCTGATATTCGAACTGCTGAAGGCGAAAAACAAGCAAAGATCCTCGCGGCTGAAGGTGAAA
AGCATGCAGCAATTTTGGCGGCAGAAGCAGCAAAGGAAGCCAGAATTCTAGAAGCTGAAGGTCAACGCGCTGCGCGTTAT
CTTGAAGCTCAAGGTGAAGCTCGGGCGATTCAGAAAGTTAACGCTGCAATCAAGGCGTCTCGGTTGACACCTGAGGTCTT
GGCATATCAGTATCTCGAAAAATTGCCGCAACTTGCCGAGGGCAAAGCTTCAACAATGTGGATGATTCCATCACAGTTTG
GCGACTCGTTGGAAGAATTCGCGAAGGCGCTCGCCAATAAAGGAGACGATGGTGTCTTCCGTTACGAACCAAGTGAAGTC
GATGAGCACAGTAGCCGATTAGTTGGCGAAGACAATCATGAAGATTGGTTCAAAACTGAGTCAAACCCAGAAATTGCTGC
CGCGGTAGCAGCAGCAAATGCTGTAGCTAATAAGCCTGTTGAAGATCCTGCCACTGAATTGGACTCATTGCCCAAGACCA
AAAATTAG

Upstream 100 bases:

>100_bases
CTCGAAGCCTTGATCCCGCCGTTAATTTCCAGACAGGACAATCCGTTTGCGTAGTAGAAATTGACGGCCCAACTGCCGTT
GTATGGAAGGAGAGTAAAAC

Downstream 100 bases:

>100_bases
ATATTGCTCAATTGGTTTTTAGATTGCCTGCCATGCACAAAACGTTCGCGTCGAACCTATCGTGAACGGCAGGCAATCTG
CTTGTTAATCAATATTTGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MIVLAVIMVLFAIVIAKSIVIIPQGEAAVVERLGRYTKTVAGGISLLVPFIDRVRAKVDTRERVVSFPPQAVITQDNLTV
AIDTVVTFQINDAAKAIYGVDNYIVGVEQISVATLRDVVGGMTLEETLTSREVINRRLRGELDAATTKWGLRISRVELKA
IDPPPSIQQSMEMQMKADREKRAMILTAEGRRESDIRTAEGEKQAKILAAEGEKHAAILAAEAAKEARILEAEGQRAARY
LEAQGEARAIQKVNAAIKASRLTPEVLAYQYLEKLPQLAEGKASTMWMIPSQFGDSLEEFAKALANKGDDGVFRYEPSEV
DEHSSRLVGEDNHEDWFKTESNPEIAAAVAAANAVANKPVEDPATELDSLPKTKN

Sequences:

>Translated_375_residues
MIVLAVIMVLFAIVIAKSIVIIPQGEAAVVERLGRYTKTVAGGISLLVPFIDRVRAKVDTRERVVSFPPQAVITQDNLTV
AIDTVVTFQINDAAKAIYGVDNYIVGVEQISVATLRDVVGGMTLEETLTSREVINRRLRGELDAATTKWGLRISRVELKA
IDPPPSIQQSMEMQMKADREKRAMILTAEGRRESDIRTAEGEKQAKILAAEGEKHAAILAAEAAKEARILEAEGQRAARY
LEAQGEARAIQKVNAAIKASRLTPEVLAYQYLEKLPQLAEGKASTMWMIPSQFGDSLEEFAKALANKGDDGVFRYEPSEV
DEHSSRLVGEDNHEDWFKTESNPEIAAAVAAANAVANKPVEDPATELDSLPKTKN
>Mature_375_residues
MIVLAVIMVLFAIVIAKSIVIIPQGEAAVVERLGRYTKTVAGGISLLVPFIDRVRAKVDTRERVVSFPPQAVITQDNLTV
AIDTVVTFQINDAAKAIYGVDNYIVGVEQISVATLRDVVGGMTLEETLTSREVINRRLRGELDAATTKWGLRISRVELKA
IDPPPSIQQSMEMQMKADREKRAMILTAEGRRESDIRTAEGEKQAKILAAEGEKHAAILAAEAAKEARILEAEGQRAARY
LEAQGEARAIQKVNAAIKASRLTPEVLAYQYLEKLPQLAEGKASTMWMIPSQFGDSLEEFAKALANKGDDGVFRYEPSEV
DEHSSRLVGEDNHEDWFKTESNPEIAAAVAAANAVANKPVEDPATELDSLPKTKN

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=296, Percent_Identity=37.1621621621622, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI21686995, Length=208, Percent_Identity=36.5384615384615, Blast_Score=108, Evalue=6e-24,
Organism=Homo sapiens, GI221316744, Length=208, Percent_Identity=36.5384615384615, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI38016911, Length=185, Percent_Identity=34.0540540540541, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI7657615, Length=188, Percent_Identity=22.3404255319149, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI20149563, Length=162, Percent_Identity=28.3950617283951, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI1786697, Length=316, Percent_Identity=39.873417721519, Blast_Score=212, Evalue=3e-56,
Organism=Caenorhabditis elegans, GI32564147, Length=296, Percent_Identity=34.4594594594595, Blast_Score=161, Evalue=7e-40,
Organism=Caenorhabditis elegans, GI25153583, Length=200, Percent_Identity=36, Blast_Score=111, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71987612, Length=200, Percent_Identity=36, Blast_Score=110, Evalue=9e-25,
Organism=Caenorhabditis elegans, GI193209764, Length=238, Percent_Identity=33.6134453781513, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17569493, Length=238, Percent_Identity=33.6134453781513, Blast_Score=109, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI71987621, Length=200, Percent_Identity=36, Blast_Score=108, Evalue=3e-24,
Organism=Caenorhabditis elegans, GI17569499, Length=194, Percent_Identity=33.5051546391753, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17569497, Length=188, Percent_Identity=31.3829787234043, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17570161, Length=191, Percent_Identity=32.9842931937173, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI193210507, Length=191, Percent_Identity=32.9842931937173, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI32566490, Length=198, Percent_Identity=32.8282828282828, Blast_Score=97, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17570459, Length=224, Percent_Identity=32.5892857142857, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI71989948, Length=158, Percent_Identity=32.2784810126582, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71989955, Length=158, Percent_Identity=32.2784810126582, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI45550506, Length=291, Percent_Identity=34.7079037800687, Blast_Score=158, Evalue=7e-39,
Organism=Drosophila melanogaster, GI281361633, Length=236, Percent_Identity=30.5084745762712, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI281361631, Length=236, Percent_Identity=30.5084745762712, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI21356845, Length=228, Percent_Identity=30.2631578947368, Blast_Score=113, Evalue=2e-25,
Organism=Drosophila melanogaster, GI45556022, Length=197, Percent_Identity=36.0406091370558, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI18860517, Length=194, Percent_Identity=35.0515463917526, Blast_Score=108, Evalue=7e-24,
Organism=Drosophila melanogaster, GI24657857, Length=198, Percent_Identity=33.8383838383838, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI281365664, Length=198, Percent_Identity=33.8383838383838, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI62484448, Length=198, Percent_Identity=33.8383838383838, Blast_Score=101, Evalue=7e-22,
Organism=Drosophila melanogaster, GI62484274, Length=198, Percent_Identity=33.8383838383838, Blast_Score=101, Evalue=1e-21,
Organism=Drosophila melanogaster, GI28573263, Length=198, Percent_Identity=31.8181818181818, Blast_Score=99, Evalue=4e-21,
Organism=Drosophila melanogaster, GI281361635, Length=176, Percent_Identity=31.8181818181818, Blast_Score=88, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 40988; Mature: 40988

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLAVIMVLFAIVIAKSIVIIPQGEAAVVERLGRYTKTVAGGISLLVPFIDRVRAKVDT
CHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
RERVVSFPPQAVITQDNLTVAIDTVVTFQINDAAKAIYGVDNYIVGVEQISVATLRDVVG
HHHHHCCCCCEEEECCCCEEEEEEEEEEEECHHHHHHHCCCHHEEEHHHHHHHHHHHHHC
GMTLEETLTSREVINRRLRGELDAATTKWGLRISRVELKAIDPPPSIQQSMEMQMKADRE
CCCHHHHHHHHHHHHHHHCCCHHCCHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHCCCC
KRAMILTAEGRRESDIRTAEGEKQAKILAAEGEKHAAILAAEAAKEARILEAEGQRAARY
CCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHH
LEAQGEARAIQKVNAAIKASRLTPEVLAYQYLEKLPQLAEGKASTMWMIPSQFGDSLEEF
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHH
AKALANKGDDGVFRYEPSEVDEHSSRLVGEDNHEDWFKTESNPEIAAAVAAANAVANKPV
HHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
EDPATELDSLPKTKN
CCHHHHHHCCCCCCC
>Mature Secondary Structure
MIVLAVIMVLFAIVIAKSIVIIPQGEAAVVERLGRYTKTVAGGISLLVPFIDRVRAKVDT
CHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
RERVVSFPPQAVITQDNLTVAIDTVVTFQINDAAKAIYGVDNYIVGVEQISVATLRDVVG
HHHHHCCCCCEEEECCCCEEEEEEEEEEEECHHHHHHHCCCHHEEEHHHHHHHHHHHHHC
GMTLEETLTSREVINRRLRGELDAATTKWGLRISRVELKAIDPPPSIQQSMEMQMKADRE
CCCHHHHHHHHHHHHHHHCCCHHCCHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHCCCC
KRAMILTAEGRRESDIRTAEGEKQAKILAAEGEKHAAILAAEAAKEARILEAEGQRAARY
CCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEHHHHHHHHHHHHCCHHHHHH
LEAQGEARAIQKVNAAIKASRLTPEVLAYQYLEKLPQLAEGKASTMWMIPSQFGDSLEEF
HHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCHHHHHH
AKALANKGDDGVFRYEPSEVDEHSSRLVGEDNHEDWFKTESNPEIAAAVAAANAVANKPV
HHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
EDPATELDSLPKTKN
CCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]