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The map label for this gene is pup

Identifier: 38233834

GI number: 38233834

Start: 1249238

End: 1249432

Strand: Reverse

Name: pup

Synonym: DIP1246

Alternate gene names: 38233834

Gene position: 1249432-1249238 (Counterclockwise)

Preceding gene: 38233835

Following gene: 38233833

Centisome position: 50.21

GC content: 45.13

Gene sequence:

>195_bases
ATGAACCAGAACGGTAGCCAAATTCATTCCGACGGCAATGGACACTCTGACGATACTGACACGCCTGGGGTTTCAGCTGG
TCAAGTAAGTGTCAACACTGCTGGAGTTGATGATCTTTTAGATGAAATTGACGGTCTTTTGGAATCAAACGCTGAAGAGT
TCGTTCGTTCCTATGTTCAGAAAGGTGGACAGTAA

Upstream 100 bases:

>100_bases
TTTGTCTCAGTGGTTACCGGTCACAACTATTTCCTTGACATAAAACTTTGTTTTCATGCAAGGGTACGCTAATAACTTAG
ATCTTTAAGGAGCAATCATT

Downstream 100 bases:

>100_bases
ATCCGTGGGCGAGTACGAACGCACAGTTTTTACACGACGAATCACGGGCGTAGAAACCGAATATGGAATCACTTGTGTCG
GCGACAACAGTCGCCGGCGC

Product: hypothetical protein

Products: NA

Alternate protein names: Bacterial ubiquitin-like modifier

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MNQNGSQIHSDGNGHSDDTDTPGVSAGQVSVNTAGVDDLLDEIDGLLESNAEEFVRSYVQKGGQ

Sequences:

>Translated_64_residues
MNQNGSQIHSDGNGHSDDTDTPGVSAGQVSVNTAGVDDLLDEIDGLLESNAEEFVRSYVQKGGQ
>Mature_64_residues
MNQNGSQIHSDGNGHSDDTDTPGVSAGQVSVNTAGVDDLLDEIDGLLESNAEEFVRSYVQKGGQ

Specific function: Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prokaryotic ubiquitin-like protein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PUP_CORDI (Q6NH94)

Other databases:

- EMBL:   BX248357
- RefSeq:   NP_939601.1
- GeneID:   2649801
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1246
- NMPDR:   fig|257309.1.peg.1192
- HOGENOM:   HBG700099
- OMA:   SINSAGT
- ProtClustDB:   CLSK2522173
- BioCyc:   CDIP257309:DIP1246-MONOMER
- HAMAP:   MF_02106
- InterPro:   IPR008515
- TIGRFAMs:   TIGR03687

Pfam domain/function: PF05639 DUF797

EC number: NA

Molecular weight: Translated: 6677; Mature: 6677

Theoretical pI: Translated: 3.73; Mature: 3.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQNGSQIHSDGNGHSDDTDTPGVSAGQVSVNTAGVDDLLDEIDGLLESNAEEFVRSYVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
KGGQ
CCCC
>Mature Secondary Structure
MNQNGSQIHSDGNGHSDDTDTPGVSAGQVSVNTAGVDDLLDEIDGLLESNAEEFVRSYVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
KGGQ
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910