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The map label for this gene is ychJ [C]

Identifier: 38233791

GI number: 38233791

Start: 1201642

End: 1202019

Strand: Reverse

Name: ychJ [C]

Synonym: DIP1201

Alternate gene names: 38233791

Gene position: 1202019-1201642 (Counterclockwise)

Preceding gene: 38233792

Following gene: 38233789

Centisome position: 48.3

GC content: 48.68

Gene sequence:

>378_bases
ATGATGAATTGCCCGTGTGGTTCCGGCACCAGTTATTCAGACTGCTGCCAACCTTTTCACACCAAGGCTAAAAATGCACC
AACTGCTGAATTGTTGATGCGATCACGCTATTCGGCTTTTGTGCTGGGGAATGAGGAGTACCTTCTATACTCTTGGGCAC
CTGAAACCGCGCCTCATAGCTTGAATCTTGAAGAATTTATTATGTGGCGCGGACTCACCATCCATCAGTCCTATCACGGC
GGCCTTTTTGACTCGACGGGGATTGTCGAATTCACTGCTAGGTATGCTGTCTGTGGACAACTGCAATCACAACATGAAAC
GTCCCATTTCAGACGCCATGATGGGCGCTGGGTCTATGTTGACGGAGATCTTCATTAG

Upstream 100 bases:

>100_bases
TGACGAACGCCATGAATTGCTTCTTGCTGCTCGCAATAGTGATATTGAAAAGATGCTTCAAGGAAACGTAACCATCAACG
ACCAGGACGTTTAGCACCTC

Downstream 100 bases:

>100_bases
AAATATATCTAAGTGCTAGGGATTCCCCAGTTCCGGCTCCAGTCTAAGAATTAGAGTGAACTTTTTCACTAGCAGATGTT
CACTGCGCACCTAAAATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MMNCPCGSGTSYSDCCQPFHTKAKNAPTAELLMRSRYSAFVLGNEEYLLYSWAPETAPHSLNLEEFIMWRGLTIHQSYHG
GLFDSTGIVEFTARYAVCGQLQSQHETSHFRRHDGRWVYVDGDLH

Sequences:

>Translated_125_residues
MMNCPCGSGTSYSDCCQPFHTKAKNAPTAELLMRSRYSAFVLGNEEYLLYSWAPETAPHSLNLEEFIMWRGLTIHQSYHG
GLFDSTGIVEFTARYAVCGQLQSQHETSHFRRHDGRWVYVDGDLH
>Mature_125_residues
MMNCPCGSGTSYSDCCQPFHTKAKNAPTAELLMRSRYSAFVLGNEEYLLYSWAPETAPHSLNLEEFIMWRGLTIHQSYHG
GLFDSTGIVEFTARYAVCGQLQSQHETSHFRRHDGRWVYVDGDLH

Specific function: Unknown

COG id: COG3012

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0225 family [H]

Homologues:

Organism=Escherichia coli, GI1787484, Length=124, Percent_Identity=38.7096774193548, Blast_Score=90, Evalue=5e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004027
- InterPro:   IPR023006 [H]

Pfam domain/function: PF02810 SEC-C [H]

EC number: NA

Molecular weight: Translated: 14266; Mature: 14266

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNCPCGSGTSYSDCCQPFHTKAKNAPTAELLMRSRYSAFVLGNEEYLLYSWAPETAPHS
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCC
LNLEEFIMWRGLTIHQSYHGGLFDSTGIVEFTARYAVCGQLQSQHETSHFRRHDGRWVYV
CCHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DGDLH
CCCCC
>Mature Secondary Structure
MMNCPCGSGTSYSDCCQPFHTKAKNAPTAELLMRSRYSAFVLGNEEYLLYSWAPETAPHS
CCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEECCCCEEEEEECCCCCCCC
LNLEEFIMWRGLTIHQSYHGGLFDSTGIVEFTARYAVCGQLQSQHETSHFRRHDGRWVYV
CCHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
DGDLH
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]