| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is helD [H]
Identifier: 38233746
GI number: 38233746
Start: 1144967
End: 1147279
Strand: Reverse
Name: helD [H]
Synonym: DIP1156
Alternate gene names: 38233746
Gene position: 1147279-1144967 (Counterclockwise)
Preceding gene: 38233747
Following gene: 38233741
Centisome position: 46.1
GC content: 49.89
Gene sequence:
>2313_bases ATGATTCACAGCTTGTTCTTTCATAACAACACGAAAGGCACGCCATCAATGAAACACCCCATCGATTCAATCTCTGCAGA GATTGAAGACGAACAGGCGTACGTCGATAAGCTTTTTGGAAAACTTGACGAGGAAGTAGTAGCAGCCAATCAGCGTCTCA ACGACGTTATGCTGCACGTCGACCCTGCTAACCCCGATGCAGAAGCTTTGGTCAGACGTGAAACTGAATATCACGCATTG AACGAGAAAATCGATCGACTCAATATTGCCCAATTGGGATTAGTTTTTGGCCGAATCGACGTAACCGCCCAGCGCACAGA CCTCATCGATAATTGGGTTGCAGGGACAGACAACGTCGATCGTCGTTATATCGGACGCATGGGGCTTGATGATCGCCAAA ATGATTACCGGACCCTCCTATTGGACTGGCGTGCGCCATTAGCCCGACCGTTTTACCTAGCCACTACTGCACATCCCGAA GGTGTTTTGCATCGTAGACACATCCGAACTCAAGGTCGTTCAGTCGTAGGTGTAGATGATGAAGTGCTCAGTGGTGTTAG TGCGGAAAGCGCCCACAGTGAGCGTGCAGATGTAGTGAGCGAAACCGCTTTGTACCGCGCTATGTGTTCTGCACGCACAG GTCACATGCATTCCATCGTAGAAACCATTCAACGCGAACAGGATGACATTATTCGCGACCCAACTCGTGGAGTCATGGTT GTTGAAGGCGGACCTGGTACAGGTAAAACTGCTGTAGCGCTACACCGAGTAGCATACCTTCTGTATACATGGCGCGATCA ACTCGCAAAAACTGGTGTACTCATCGTGGGGCCAAACCGTAGCTTTTTGGACTATATCTCTCGAGTTCTTCCAGAATTAG GCGAGACTGGTGTCGTGTTGTCAACCGTCGGGGACCTCTACCCTGGCATCAGCGGCACCGCTGTTGAAGATTCACTCGCT CGTGAGATTAAAGGCAGTGAGGAAATGGTCACTGTCCTCCGGCGACTGGTACAAGAATATCAACAGATTCCTTCAGAGCC ATTCACTATCAAAATCGATGGCCTAGAACTCACAGTCACTCCAGACATAGTGAAAAAAGCACGAACACGAGCTCGCAGAT CGAGACGACCTCACAATGAAGCTAGGCCACTATTTACTGAGCACTTGACTGAGCTGCTTTCACATCAAATGGCCGACCTT ATTGGTGCCGACCCCATGGGGGGAAAGAATTTGCTCTCAGCTGCCGATATTGCTCAGTTACATGATGAACTGCTAGAAGA ATCCGTTGTTGCCGAGATAGTCGATGAGTACTGGCCGCAACTTACCCCCCAGGACACATTAACGAGTCTGCTCGAATCTC AAAATATGATCAGCACAGTTGCCTACGACTACGACGAGGAAACTCAAGAAGCTCTATGGAGACAACAAGGTAGCCCCTGG GCCGCCTCAGATGCAGCGTTGCTGGACGAACTAGCTGTCATCATCGGGGTACCGGATCCAGAAAAAGAACGAGCCGAGCA AGAAAAAGCGTGGCGCGAACAAATCAAAGACGCTCAGGATGCGCTAGAAATCCTCACCGGTTCAGCTAACACAGATCTAG ATGATGAATCCGACGCTGAAATCCTTTCTGCTCATGATGTCATCGATGCAGAAACATTGGCTCGACGCCAAGAAGTCCGT GATATTAGATCAACAGCTCAACGAGCACGAGAAGATCTAGCGTGGGCGTACGGCCATGTCATCGTCGACGAAGCTCAAGA GCTCACTCCCATGGAATGGCGAATGGTCATGCGCCGCTGTCCATCACGATGGATGACACTTGTAGGCGATACCGCACAAA CTAGTTCCCCAGCCGGAGTTGACTCTTGGGCTGAAGCCCTAGAGCCGTTTGTTAGCGGCCGCTATGTAACCCACCACCTC ACTATTAACTACCGCACTCCAGCAGAAATCATGGAATGGGCGAATAAAGTCCTGCACGTTTTTGCACCCGATGCAGTCGG AAGCACCGCTCTACGACAATCAGGCACACCAGTACGATTTGAAAATAGTGATGCACATGCAATTGAGATCGCACAAAAGC TACGCCAAGATGATCCATCACGCCTTACTGCCATCATCGGACCAGACAGCATGGCGAACAATGAGATTTTCGGCGTTTCA GATATCAAAGGGTTGGAATACGACCATGTCGTTGTGACCAACCCAATCGATATTGTTAATGGATCCCCACAGGGATGGCA AGACCTTTATGTTGCACTAACCCGGGCCACACAGTCCCTTTGTATTATCGGCGATCTTCCTGAATTGTCATAA
Upstream 100 bases:
>100_bases ACGAGTGCTGGCTTTATCACCTAACGAGAGACGGTGTTAAAGCCAGCACTCGCATTTCCCCACTACAACGACTAGATGCA AGCCGTAGTTGAGAAGCGGT
Downstream 100 bases:
>100_bases AAAAATGGTGCCATGCGAAAACGCATGGCACCATTGTGTATTTGCTCTTTAGCTTACGGTGTGAACAATCATGACGTCAC AATCCGACTGACGTGCAACA
Product: putative helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 770; Mature: 770
Protein sequence:
>770_residues MIHSLFFHNNTKGTPSMKHPIDSISAEIEDEQAYVDKLFGKLDEEVVAANQRLNDVMLHVDPANPDAEALVRRETEYHAL NEKIDRLNIAQLGLVFGRIDVTAQRTDLIDNWVAGTDNVDRRYIGRMGLDDRQNDYRTLLLDWRAPLARPFYLATTAHPE GVLHRRHIRTQGRSVVGVDDEVLSGVSAESAHSERADVVSETALYRAMCSARTGHMHSIVETIQREQDDIIRDPTRGVMV VEGGPGTGKTAVALHRVAYLLYTWRDQLAKTGVLIVGPNRSFLDYISRVLPELGETGVVLSTVGDLYPGISGTAVEDSLA REIKGSEEMVTVLRRLVQEYQQIPSEPFTIKIDGLELTVTPDIVKKARTRARRSRRPHNEARPLFTEHLTELLSHQMADL IGADPMGGKNLLSAADIAQLHDELLEESVVAEIVDEYWPQLTPQDTLTSLLESQNMISTVAYDYDEETQEALWRQQGSPW AASDAALLDELAVIIGVPDPEKERAEQEKAWREQIKDAQDALEILTGSANTDLDDESDAEILSAHDVIDAETLARRQEVR DIRSTAQRAREDLAWAYGHVIVDEAQELTPMEWRMVMRRCPSRWMTLVGDTAQTSSPAGVDSWAEALEPFVSGRYVTHHL TINYRTPAEIMEWANKVLHVFAPDAVGSTALRQSGTPVRFENSDAHAIEIAQKLRQDDPSRLTAIIGPDSMANNEIFGVS DIKGLEYDHVVVTNPIDIVNGSPQGWQDLYVALTRATQSLCIIGDLPELS
Sequences:
>Translated_770_residues MIHSLFFHNNTKGTPSMKHPIDSISAEIEDEQAYVDKLFGKLDEEVVAANQRLNDVMLHVDPANPDAEALVRRETEYHAL NEKIDRLNIAQLGLVFGRIDVTAQRTDLIDNWVAGTDNVDRRYIGRMGLDDRQNDYRTLLLDWRAPLARPFYLATTAHPE GVLHRRHIRTQGRSVVGVDDEVLSGVSAESAHSERADVVSETALYRAMCSARTGHMHSIVETIQREQDDIIRDPTRGVMV VEGGPGTGKTAVALHRVAYLLYTWRDQLAKTGVLIVGPNRSFLDYISRVLPELGETGVVLSTVGDLYPGISGTAVEDSLA REIKGSEEMVTVLRRLVQEYQQIPSEPFTIKIDGLELTVTPDIVKKARTRARRSRRPHNEARPLFTEHLTELLSHQMADL IGADPMGGKNLLSAADIAQLHDELLEESVVAEIVDEYWPQLTPQDTLTSLLESQNMISTVAYDYDEETQEALWRQQGSPW AASDAALLDELAVIIGVPDPEKERAEQEKAWREQIKDAQDALEILTGSANTDLDDESDAEILSAHDVIDAETLARRQEVR DIRSTAQRAREDLAWAYGHVIVDEAQELTPMEWRMVMRRCPSRWMTLVGDTAQTSSPAGVDSWAEALEPFVSGRYVTHHL TINYRTPAEIMEWANKVLHVFAPDAVGSTALRQSGTPVRFENSDAHAIEIAQKLRQDDPSRLTAIIGPDSMANNEIFGVS DIKGLEYDHVVVTNPIDIVNGSPQGWQDLYVALTRATQSLCIIGDLPELS >Mature_770_residues MIHSLFFHNNTKGTPSMKHPIDSISAEIEDEQAYVDKLFGKLDEEVVAANQRLNDVMLHVDPANPDAEALVRRETEYHAL NEKIDRLNIAQLGLVFGRIDVTAQRTDLIDNWVAGTDNVDRRYIGRMGLDDRQNDYRTLLLDWRAPLARPFYLATTAHPE GVLHRRHIRTQGRSVVGVDDEVLSGVSAESAHSERADVVSETALYRAMCSARTGHMHSIVETIQREQDDIIRDPTRGVMV VEGGPGTGKTAVALHRVAYLLYTWRDQLAKTGVLIVGPNRSFLDYISRVLPELGETGVVLSTVGDLYPGISGTAVEDSLA REIKGSEEMVTVLRRLVQEYQQIPSEPFTIKIDGLELTVTPDIVKKARTRARRSRRPHNEARPLFTEHLTELLSHQMADL IGADPMGGKNLLSAADIAQLHDELLEESVVAEIVDEYWPQLTPQDTLTSLLESQNMISTVAYDYDEETQEALWRQQGSPW AASDAALLDELAVIIGVPDPEKERAEQEKAWREQIKDAQDALEILTGSANTDLDDESDAEILSAHDVIDAETLARRQEVR DIRSTAQRAREDLAWAYGHVIVDEAQELTPMEWRMVMRRCPSRWMTLVGDTAQTSSPAGVDSWAEALEPFVSGRYVTHHL TINYRTPAEIMEWANKVLHVFAPDAVGSTALRQSGTPVRFENSDAHAIEIAQKLRQDDPSRLTAIIGPDSMANNEIFGVS DIKGLEYDHVVVTNPIDIVNGSPQGWQDLYVALTRATQSLCIIGDLPELS
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 85876; Mature: 85876
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIHSLFFHNNTKGTPSMKHPIDSISAEIEDEQAYVDKLFGKLDEEVVAANQRLNDVMLHV CCEEEEEECCCCCCCCHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE DPANPDAEALVRRETEYHALNEKIDRLNIAQLGLVFGRIDVTAQRTDLIDNWVAGTDNVD ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCCCCCCH RRYIGRMGLDDRQNDYRTLLLDWRAPLARPFYLATTAHPEGVLHRRHIRTQGRSVVGVDD HHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCH EVLSGVSAESAHSERADVVSETALYRAMCSARTGHMHSIVETIQREQDDIIRDPTRGVMV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE VEGGPGTGKTAVALHRVAYLLYTWRDQLAKTGVLIVGPNRSFLDYISRVLPELGETGVVL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCHH STVGDLYPGISGTAVEDSLAREIKGSEEMVTVLRRLVQEYQQIPSEPFTIKIDGLELTVT HHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEC PDIVKKARTRARRSRRPHNEARPLFTEHLTELLSHQMADLIGADPMGGKNLLSAADIAQL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH HDELLEESVVAEIVDEYWPQLTPQDTLTSLLESQNMISTVAYDYDEETQEALWRQQGSPW HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCC AASDAALLDELAVIIGVPDPEKERAEQEKAWREQIKDAQDALEILTGSANTDLDDESDAE CCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH ILSAHDVIDAETLARRQEVRDIRSTAQRAREDLAWAYGHVIVDEAQELTPMEWRMVMRRC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHC PSRWMTLVGDTAQTSSPAGVDSWAEALEPFVSGRYVTHHLTINYRTPAEIMEWANKVLHV CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHEEH FAPDAVGSTALRQSGTPVRFENSDAHAIEIAQKLRQDDPSRLTAIIGPDSMANNEIFGVS CCCCHHCHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCC DIKGLEYDHVVVTNPIDIVNGSPQGWQDLYVALTRATQSLCIIGDLPELS CCCCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCC >Mature Secondary Structure MIHSLFFHNNTKGTPSMKHPIDSISAEIEDEQAYVDKLFGKLDEEVVAANQRLNDVMLHV CCEEEEEECCCCCCCCHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE DPANPDAEALVRRETEYHALNEKIDRLNIAQLGLVFGRIDVTAQRTDLIDNWVAGTDNVD ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHCCCCCCCH RRYIGRMGLDDRQNDYRTLLLDWRAPLARPFYLATTAHPEGVLHRRHIRTQGRSVVGVDD HHHHHCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHCCCEEECCCH EVLSGVSAESAHSERADVVSETALYRAMCSARTGHMHSIVETIQREQDDIIRDPTRGVMV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE VEGGPGTGKTAVALHRVAYLLYTWRDQLAKTGVLIVGPNRSFLDYISRVLPELGETGVVL EECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHCCCCCCHH STVGDLYPGISGTAVEDSLAREIKGSEEMVTVLRRLVQEYQQIPSEPFTIKIDGLELTVT HHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCEEEEEC PDIVKKARTRARRSRRPHNEARPLFTEHLTELLSHQMADLIGADPMGGKNLLSAADIAQL HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH HDELLEESVVAEIVDEYWPQLTPQDTLTSLLESQNMISTVAYDYDEETQEALWRQQGSPW HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHCCCCC AASDAALLDELAVIIGVPDPEKERAEQEKAWREQIKDAQDALEILTGSANTDLDDESDAE CCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH ILSAHDVIDAETLARRQEVRDIRSTAQRAREDLAWAYGHVIVDEAQELTPMEWRMVMRRC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHC PSRWMTLVGDTAQTSSPAGVDSWAEALEPFVSGRYVTHHLTINYRTPAEIMEWANKVLHV CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCHHHHHHHHHHHEEH FAPDAVGSTALRQSGTPVRFENSDAHAIEIAQKLRQDDPSRLTAIIGPDSMANNEIFGVS CCCCHHCHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCC DIKGLEYDHVVVTNPIDIVNGSPQGWQDLYVALTRATQSLCIIGDLPELS CCCCCCCCCEEEECCHHCCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]