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The map label for this gene is licT [H]

Identifier: 38233740

GI number: 38233740

Start: 1136731

End: 1137558

Strand: Reverse

Name: licT [H]

Synonym: DIP1150

Alternate gene names: 38233740

Gene position: 1137558-1136731 (Counterclockwise)

Preceding gene: 38233741

Following gene: 38233739

Centisome position: 45.71

GC content: 51.81

Gene sequence:

>828_bases
ATGCAAATTCTGCGCGTTTTTAACAACAATGTGGTTCTCGCCCGTCGTGACGATGAAGAGGTCATCGTGACCGGCCGCGG
CCTGGGCTTCCAAGCTAAGACTGGAGATGACGTCGACCCCACAAAGGTAGTACGCGTTTTCGTGCCTGCTGATGGTCGAG
ATCCAGACCACTCCGCGCTCATGCTAGCCGCTATTCCTGGTGAGTACATTCGGTTAGTACTCGAAGCCATGGAACGTGCT
GGTTTATCCGAAAAACTACGCAGCACGCTCACCCTCGTGATCGCTTTAGCCGATCACGTACATGCGGCGTCAACTCGTAC
CAAATCAGTGGAGTATCCGCTTGAGGCGGAGGTTCGCCACCTCTACGCCGAAGATTTTCATAGTGCGCAGCGGTTACTCA
AAGAAATTAACTCCGAGTTACAACGTCCACTCCATGAAGCGGAGGCAATCGCATTAACACTCCACATTGTTAATGCTGGT
TTTTCCGTAGGAGATCTATCTGGAACGTATCGGATGACCGGCCTTATTGAACAGCTCTTGGAGATTATCGGCGGTTTTTA
TGGAACCACACTAAGCGGAGAAGATATTTCCGTCGCCCGTTTTATTACCCATCTGCGCTATCTTTTCGTCCGCATGGCCG
AGCACAAACAGCTTGATTCGCCTACAGCACGGGTAGCAAGCACGATTGCCGAGCAATACCCGACTGCAGCTCAATGTGCC
GAAGCTCTTTCGGCCATTATTGAATTGCGCATGAATGCCCCTCTAACCGCAGAGGAAGTATCTTATCTCACCTTGCACGT
CGCTCGTCTCGGCGCAGACAATCGCTAG

Upstream 100 bases:

>100_bases
GATACGGCCCCCTGTTATAGGGCAGCCTTCGAAGTCACTGCGAGCCAAGAGCAGGGTCGTTTCCTTTCAAGGAAGCGGCC
CTGCTTTAGAATGAATACTC

Downstream 100 bases:

>100_bases
GTAATTGTCGTAGCCTCTCTCGTGTCAATCATCACAAGTAGTAGATATTCTCCACAGAGGTCATAACCACTAGCTAAAGT
GGTTACTACATGAAAGTGTT

Product: putative transcription antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MQILRVFNNNVVLARRDDEEVIVTGRGLGFQAKTGDDVDPTKVVRVFVPADGRDPDHSALMLAAIPGEYIRLVLEAMERA
GLSEKLRSTLTLVIALADHVHAASTRTKSVEYPLEAEVRHLYAEDFHSAQRLLKEINSELQRPLHEAEAIALTLHIVNAG
FSVGDLSGTYRMTGLIEQLLEIIGGFYGTTLSGEDISVARFITHLRYLFVRMAEHKQLDSPTARVASTIAEQYPTAAQCA
EALSAIIELRMNAPLTAEEVSYLTLHVARLGADNR

Sequences:

>Translated_275_residues
MQILRVFNNNVVLARRDDEEVIVTGRGLGFQAKTGDDVDPTKVVRVFVPADGRDPDHSALMLAAIPGEYIRLVLEAMERA
GLSEKLRSTLTLVIALADHVHAASTRTKSVEYPLEAEVRHLYAEDFHSAQRLLKEINSELQRPLHEAEAIALTLHIVNAG
FSVGDLSGTYRMTGLIEQLLEIIGGFYGTTLSGEDISVARFITHLRYLFVRMAEHKQLDSPTARVASTIAEQYPTAAQCA
EALSAIIELRMNAPLTAEEVSYLTLHVARLGADNR
>Mature_275_residues
MQILRVFNNNVVLARRDDEEVIVTGRGLGFQAKTGDDVDPTKVVRVFVPADGRDPDHSALMLAAIPGEYIRLVLEAMERA
GLSEKLRSTLTLVIALADHVHAASTRTKSVEYPLEAEVRHLYAEDFHSAQRLLKEINSELQRPLHEAEAIALTLHIVNAG
FSVGDLSGTYRMTGLIEQLLEIIGGFYGTTLSGEDISVARFITHLRYLFVRMAEHKQLDSPTARVASTIAEQYPTAAQCA
EALSAIIELRMNAPLTAEEVSYLTLHVARLGADNR

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=278, Percent_Identity=27.3381294964029, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 30314; Mature: 30314

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQILRVFNNNVVLARRDDEEVIVTGRGLGFQAKTGDDVDPTKVVRVFVPADGRDPDHSAL
CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEE
MLAAIPGEYIRLVLEAMERAGLSEKLRSTLTLVIALADHVHAASTRTKSVEYPLEAEVRH
EEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LYAEDFHSAQRLLKEINSELQRPLHEAEAIALTLHIVNAGFSVGDLSGTYRMTGLIEQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
EIIGGFYGTTLSGEDISVARFITHLRYLFVRMAEHKQLDSPTARVASTIAEQYPTAAQCA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
EALSAIIELRMNAPLTAEEVSYLTLHVARLGADNR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQILRVFNNNVVLARRDDEEVIVTGRGLGFQAKTGDDVDPTKVVRVFVPADGRDPDHSAL
CCEEEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEE
MLAAIPGEYIRLVLEAMERAGLSEKLRSTLTLVIALADHVHAASTRTKSVEYPLEAEVRH
EEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LYAEDFHSAQRLLKEINSELQRPLHEAEAIALTLHIVNAGFSVGDLSGTYRMTGLIEQLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHH
EIIGGFYGTTLSGEDISVARFITHLRYLFVRMAEHKQLDSPTARVASTIAEQYPTAAQCA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHH
EALSAIIELRMNAPLTAEEVSYLTLHVARLGADNR
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]