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The map label for this gene is opuCC [H]

Identifier: 15925436

GI number: 15925436

Start: 2581370

End: 2582311

Strand: Reverse

Name: opuCC [H]

Synonym: SAV2446

Alternate gene names: 15925436

Gene position: 2582311-2581370 (Counterclockwise)

Preceding gene: 15925437

Following gene: 15925435

Centisome position: 89.71

GC content: 35.35

Gene sequence:

>942_bases
ATGAAGAAAATTAAATATATACTTGTCGTGTTTGTCTTATCGCTTACCGTATTATCTGGATGTAGTTTGCCCGGACTAGG
TAGTAAGAGCACGAAAAATGATGTCAAAATTACAGCATTATCAACAAGCGAATCGCAAATTATTTCACATATGTTACGGT
TGTTAATAGAGCATGATACACATGGTAAGATAAAGCCAACATTAGTAAATAATTTAGGGTCAAGTACGATTCAACATAAT
GCCTTAATTAATGGGGATGCTAATATATCAGGTGTTAGATATAATGGCACAGATTTAACGGGAGCTTTGAAGGAAGCACC
AATTAAAGATCCTAAGAAAGCAATGATAGCCACACAACAAGGATTTAAAAAGAAATTTGATCAAACGTTTTTTGATTCGT
ATGGTTTTGCGAATACGTATGCATTCATGGTAACGAAGGAAACTGCTAAAAAATATCATTTAGAGACAGTTTCAGATTTA
GCAAAGCATAGTAAAGATTTACGTTTAGGTATGGATAGTTCATGGATGAATCGTAAAGGCGATGGCTATGAAGGATTTAA
AAAAGAGTATGGTTTTGACTTTGGTACAGTGAGACCAATGCAAATAGGTCTAGTCTACGACGCATTAAACACAGAGAAGT
TAGACGTTGCATTAGGTTATTCTACAGATGGTCGAATTGCCGCGTATGATTTGAAAGTACTTAAAGATGATAAACAATTT
TTCCCACCTTATGCTGCGAGTGCTGTTGCAACAAATGAATTATTACGGCAACACCCAGAACTTAAAACGACGATTAATAA
GTTGACAGGAAAGATTTCGACTTCAGAGATGCAACGCTTGAATTATGAAGCGGATGGTAAAGGTAAAGAACCTGCTGTCG
TCGCAGAAGAATTTTTGAAAAAACACCACTATTTTGATAAACAGAAAGGTGGTCATAAGTAA

Upstream 100 bases:

>100_bases
ACTGCACTAGCATTAGGTGTTGATGCCTTATTAGCTTTAGTTGAAAAATGGGTAGTTCCCAAAGGCTTAAAAGTATCTGG
ATAATTAGGAGGCTAAGATA

Downstream 100 bases:

>100_bases
TGGAAGGTAATTTATTACAGCAATTATTCAATTATTATGTTACGAACTTTGGTTATCTATGGGATTTATTTTTCAAACAC
TTATTAATGTCTGTCTATGG

Product: glycine betaine/carnitine/choline ABC transporter

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHN
ALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDL
AKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK

Sequences:

>Translated_313_residues
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHN
ALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDL
AKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK
>Mature_313_residues
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDTHGKIKPTLVNNLGSSTIQHN
ALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQGFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDL
AKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLKKHHYFDKQKGGHK

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=318, Percent_Identity=25.1572327044025, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34828; Mature: 34828

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ
CCCCCHHHHHHCCCCHHHCCEEECCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHH
GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
HHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCC
DGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
CCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCHHH
FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHH
KHHYFDKQKGGHK
HHHCCCCCCCCCC
>Mature Secondary Structure
MKKIKYILVVFVLSLTVLSGCSLPGLGSKSTKNDVKITALSTSESQIISHMLRLLIEHDT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
HGKIKPTLVNNLGSSTIQHNALINGDANISGVRYNGTDLTGALKEAPIKDPKKAMIATQQ
CCCCCHHHHHHCCCCHHHCCEEECCCCCEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHH
GFKKKFDQTFFDSYGFANTYAFMVTKETAKKYHLETVSDLAKHSKDLRLGMDSSWMNRKG
HHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEECCCCHHCCCCC
DGYEGFKKEYGFDFGTVRPMQIGLVYDALNTEKLDVALGYSTDGRIAAYDLKVLKDDKQF
CCCCCHHHHHCCCCCCCCEEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEEEEECCHHH
FPPYAASAVATNELLRQHPELKTTINKLTGKISTSEMQRLNYEADGKGKEPAVVAEEFLK
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHH
KHHYFDKQKGGHK
HHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]