Click here to switch to the map view.

The map label for this gene is 15925199

Identifier: 15925199

GI number: 15925199

Start: 2352221

End: 2353237

Strand: Reverse

Name: 15925199

Synonym: SAV2209

Alternate gene names: NA

Gene position: 2353237-2352221 (Counterclockwise)

Preceding gene: 15925200

Following gene: 15925197

Centisome position: 81.75

GC content: 27.34

Gene sequence:

>1017_bases
ATGGAGAAAATTGAGAATGAAATAGTTAATAAGACATATCTTGCAATTAATTCTTTGGAAGAATTAAGAAATATGATTGG
TATTAAATCAGACTATTTTTATAAATGTCTTTATGTGAATGACCATTTTTATAATGTTATCAAAATACCTAAACGAAAAA
AAGATGAATATAGAGAATTGATGATTCCTAATATGGCTCTCAAAAATATCCAAAGGTGGATTTTAGATAATGTATTGTAC
AGAAGGCAAGTTCATAAATGTGCAACTGGTTTTGTTCCTAGGAAATCAATAGTGAACAATGCAATCCCACACGTTGGGCA
GAAATATATATTGAAAATGGATATAGAAAACTTTTTTCCGAGTATCACATTTAAGCAGGTTAGAAAAATATTTTCTGAGA
TGGGCTATAAATTTGAACTTGCGACAGCACTCGCAAATTTGTGTACAGTGAATAATCAGTTGCCTCAAGGTGCACCAACC
AGTCCATATATAGCTAATATCATCTTTTACAATATAGATAAAAGAATCTTTTCTTATTGTCAAAAAAATAATTTGAGATA
TACTCGATATGCTGATGATATTACTATTTCTGGATCTAATAAAGTAAGTTTTAGTAAAGAAATTATCAGGGAAATAGTAA
ACCAATATAATTTTAGAATTAATGAAAGTAAGACAATTATGTTTAAACCAGGAGACAGAAAAAAAGTTACTGGTATTATA
GTTAATGAAAAAATATCGGTTCCTAAAACTTTAATAAGAGAGGTCAGGAAGCAAATTTATTTTGTAAATAAGTTTGGATT
AGAAGAACACTTAATTCGAAATAATTATTCATTGGATTATGAGCAGCAATTTATTATGAGTATATATGGAAAAATCAGTT
TTATTAAAATGATTGATTTCAAGAAAGGCGTTAGTTTACAAAAGAAATTTAATGAAGTACTAGGTAATATAGAATCGTCT
AACATGTACAGAGATAATATTGACTTTGATGATATAGAACTACATTGGATAAATTAA

Upstream 100 bases:

>100_bases
ATTTAATAGTTAGGGGGGCCCCTAACGACTAAATAATGTAATAATTAAAAGAAGATGGTTTAGCAAGAGTTGCTCATTTA
GATAAAAAATGGAGAATTAA

Downstream 100 bases:

>100_bases
ACCGCTTAATAATTAATATATTTTAGTTAATATTTCTTTTGAAATTTACCACCAGCCAGCAGATTTTTATTATATTTTAA
TACCCCTAGGTTAAATTAGA

Product: hypothetical protein

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYRELMIPNMALKNIQRWILDNVLY
RRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFPSITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPT
SPYIANIIFYNIDKRIFSYCQKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGII
VNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDFKKGVSLQKKFNEVLGNIESS
NMYRDNIDFDDIELHWIN

Sequences:

>Translated_338_residues
MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYRELMIPNMALKNIQRWILDNVLY
RRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFPSITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPT
SPYIANIIFYNIDKRIFSYCQKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGII
VNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDFKKGVSLQKKFNEVLGNIESS
NMYRDNIDFDDIELHWIN
>Mature_338_residues
MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYRELMIPNMALKNIQRWILDNVLY
RRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFPSITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPT
SPYIANIIFYNIDKRIFSYCQKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGII
VNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDFKKGVSLQKKFNEVLGNIESS
NMYRDNIDFDDIELHWIN

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 40063; Mature: 40063

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYREL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHH
MIPNMALKNIQRWILDNVLYRRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEHHHHCC
SITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPTSPYIANIIFYNIDKRIFSYC
CCCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEHHEEEEHHHHHHHHH
QKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGII
HHCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHCEEECCCCEEEECCCCCCEEEEEE
VNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDF
ECCCCCCCHHHHHHHHHHEEEHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEHH
KKGVSLQKKFNEVLGNIESSNMYRDNIDFDDIELHWIN
HCCCHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEC
>Mature Secondary Structure
MEKIENEIVNKTYLAINSLEELRNMIGIKSDYFYKCLYVNDHFYNVIKIPKRKKDEYREL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEECCCCCHHHHHHH
MIPNMALKNIQRWILDNVLYRRQVHKCATGFVPRKSIVNNAIPHVGQKYILKMDIENFFP
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEHHHHCC
SITFKQVRKIFSEMGYKFELATALANLCTVNNQLPQGAPTSPYIANIIFYNIDKRIFSYC
CCCHHHHHHHHHHCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEEHHEEEEHHHHHHHHH
QKNNLRYTRYADDITISGSNKVSFSKEIIREIVNQYNFRINESKTIMFKPGDRKKVTGII
HHCCCEEEEECCCEEECCCCCCHHHHHHHHHHHHHHCEEECCCCEEEECCCCCCEEEEEE
VNEKISVPKTLIREVRKQIYFVNKFGLEEHLIRNNYSLDYEQQFIMSIYGKISFIKMIDF
ECCCCCCCHHHHHHHHHHEEEHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEEHH
KKGVSLQKKFNEVLGNIESSNMYRDNIDFDDIELHWIN
HCCCHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]