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The map label for this gene is crtI [H]

Identifier: 15899171

GI number: 15899171

Start: 2200206

End: 2201762

Strand: Reverse

Name: crtI [H]

Synonym: SSO2422

Alternate gene names: 15899171

Gene position: 2201762-2200206 (Counterclockwise)

Preceding gene: 15899174

Following gene: 15899170

Centisome position: 73.58

GC content: 37.38

Gene sequence:

>1557_bases
ATGATAGATGTAGCAATTATTGGTGGAGGCCATAATGGGCTAGTTACAGCAGCATACCTAGCTAAGGCTGGATTAAAAGT
AGCTGTGTTTGAGAGAAGGGAAATAGTAGGTGGAGCATCGGTTACTGAGGAGTTATGGCCTAGTATTAAAGTCTCAACTG
GTGCTTACGTACTCAGTCTATTAAGACCTAAAATAATAGAAGAATTAAAACTAAGGGAGTTTGGATTAAAGGTTTATTTA
AAAGATCCGGGATTATTTTTACCATTTGAAAATGGCAAAAAATTATATATTTGGTCAAGTCTAGAGAAAACTAAGAAAGA
GATAGAGAAATTTTCAAAAAATGATGCTAAAAATTACAAAAAATGGGTTAAGTTTTGGGACCTATTCGCCGAAATGGCTG
ATTTTTTCATGCTAAATCCCCCACCACATATAGATGAAGCTAGCAATCTAATCAATATATTTAGGGGAAACGTTAATGAA
GAATTGGCATTAAGCTTCTTGAGAACTTTCATGCAAGATGCAAAATCATTATTAGATGAGTATTTCGAAACAGATGAAGT
TAAATCAGCATTGGCTGAAGATTCCGTAGTAGGAACATTTGCCTCACCTTCGACTCCAGGGACAGCATATGTGTTAGCTC
ATCATGTTATAGGTGAAGTGAACGGCGTGAAAGGAGCTTGGGGTTACGTAGAGGGAGGAATGGGAGAGGTTACTCAAGCT
CTTAAGAGATCAGCTGAGCACCTTGGGGTAGAGATTTACACTAATGCAGAAGTTGATGAGGTATTAGTAAAGAATGGAAG
GGTAGAAGGTATAAAACTGAAAAATGGTAAAACAATAAACGCTAAAATTATCGTTTCAAATGCCGATCCTAAAACTACGT
TCTTTAAACTTTTAAGAAATGCAGAGCTAGAAGAAGACTTCCTTAGAAGAGTGAGAGCTTTGAAGAACGTTGGCGTCTCT
TTTAAAATAGTTGGATATCTGGAGGAGCTACCAGATTTCGGGAATGGCAAGAGTTTATCACCAGAACATATAGCATCTGA
ATTGATTATGCCTAACATGGAATACATAGAGAAAGCGTACGATGATGCTAGAGCATTAGGGTACTCTAGGGAACCTTGGC
TTTCCATTAACATTCAATCCTCCGTCGATCCTACAGTAGCTCCACCAGGGAAGTTCTCCTTTTCCATATTTGGGCAGTAC
TTAGTTTACGACAGTAAGAGAAATGATGAAATGAAAGAAAAAATTGCTGAAATAACTTTTGAGAAAATAAAGGAGTTTGC
ACCAAATTTCAAACCCATTAAGTATGAAGTTTTAACTCCATTGGACATTGAGAGGAGATTTGGAATCAACGGCGGAAATA
TTTTCCATTTAGATATGACTCCAGATCAACTATACTTTTTCCGACCATTAATAGGTTATAGTGATTATACTACACCTATA
AGGGGACTTTACTTGTGTGGATCTGGAACACATCCAGGTGGCGGTGTTACCGGAGCTCCAGGATATAATGCTCACGTCAA
AATTCTAGAAGATTTGAGAAAAGGCATTTACAAATAG

Upstream 100 bases:

>100_bases
TTGTTCAAACGATTGAGACATTCACATACATCTCTATAGGAATCGGGGCTTTAGGAGTTCTAATAGGATTTTTAGTATGG
CTAACTAACAGGCGAGCTAA

Downstream 100 bases:

>100_bases
ATACTAATTGGGTGCTTTTCTAGATAAAAAGTTTTGAAATAAGCTTATAATCATAAAGGCAGATATTTTTCTTGATTTAA
GTTGATAGAACCCGTACTTA

Product: phytoene dehydrogenase related protein

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MIDVAIIGGGHNGLVTAAYLAKAGLKVAVFERREIVGGASVTEELWPSIKVSTGAYVLSLLRPKIIEELKLREFGLKVYL
KDPGLFLPFENGKKLYIWSSLEKTKKEIEKFSKNDAKNYKKWVKFWDLFAEMADFFMLNPPPHIDEASNLINIFRGNVNE
ELALSFLRTFMQDAKSLLDEYFETDEVKSALAEDSVVGTFASPSTPGTAYVLAHHVIGEVNGVKGAWGYVEGGMGEVTQA
LKRSAEHLGVEIYTNAEVDEVLVKNGRVEGIKLKNGKTINAKIIVSNADPKTTFFKLLRNAELEEDFLRRVRALKNVGVS
FKIVGYLEELPDFGNGKSLSPEHIASELIMPNMEYIEKAYDDARALGYSREPWLSINIQSSVDPTVAPPGKFSFSIFGQY
LVYDSKRNDEMKEKIAEITFEKIKEFAPNFKPIKYEVLTPLDIERRFGINGGNIFHLDMTPDQLYFFRPLIGYSDYTTPI
RGLYLCGSGTHPGGGVTGAPGYNAHVKILEDLRKGIYK

Sequences:

>Translated_518_residues
MIDVAIIGGGHNGLVTAAYLAKAGLKVAVFERREIVGGASVTEELWPSIKVSTGAYVLSLLRPKIIEELKLREFGLKVYL
KDPGLFLPFENGKKLYIWSSLEKTKKEIEKFSKNDAKNYKKWVKFWDLFAEMADFFMLNPPPHIDEASNLINIFRGNVNE
ELALSFLRTFMQDAKSLLDEYFETDEVKSALAEDSVVGTFASPSTPGTAYVLAHHVIGEVNGVKGAWGYVEGGMGEVTQA
LKRSAEHLGVEIYTNAEVDEVLVKNGRVEGIKLKNGKTINAKIIVSNADPKTTFFKLLRNAELEEDFLRRVRALKNVGVS
FKIVGYLEELPDFGNGKSLSPEHIASELIMPNMEYIEKAYDDARALGYSREPWLSINIQSSVDPTVAPPGKFSFSIFGQY
LVYDSKRNDEMKEKIAEITFEKIKEFAPNFKPIKYEVLTPLDIERRFGINGGNIFHLDMTPDQLYFFRPLIGYSDYTTPI
RGLYLCGSGTHPGGGVTGAPGYNAHVKILEDLRKGIYK
>Mature_518_residues
MIDVAIIGGGHNGLVTAAYLAKAGLKVAVFERREIVGGASVTEELWPSIKVSTGAYVLSLLRPKIIEELKLREFGLKVYL
KDPGLFLPFENGKKLYIWSSLEKTKKEIEKFSKNDAKNYKKWVKFWDLFAEMADFFMLNPPPHIDEASNLINIFRGNVNE
ELALSFLRTFMQDAKSLLDEYFETDEVKSALAEDSVVGTFASPSTPGTAYVLAHHVIGEVNGVKGAWGYVEGGMGEVTQA
LKRSAEHLGVEIYTNAEVDEVLVKNGRVEGIKLKNGKTINAKIIVSNADPKTTFFKLLRNAELEEDFLRRVRALKNVGVS
FKIVGYLEELPDFGNGKSLSPEHIASELIMPNMEYIEKAYDDARALGYSREPWLSINIQSSVDPTVAPPGKFSFSIFGQY
LVYDSKRNDEMKEKIAEITFEKIKEFAPNFKPIKYEVLTPLDIERRFGINGGNIFHLDMTPDQLYFFRPLIGYSDYTTPI
RGLYLCGSGTHPGGGVTGAPGYNAHVKILEDLRKGIYK

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI229577391, Length=552, Percent_Identity=38.5869565217391, Blast_Score=375, Evalue=1e-104,
Organism=Caenorhabditis elegans, GI17540238, Length=519, Percent_Identity=41.8111753371869, Blast_Score=385, Evalue=1e-107,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 57945; Mature: 57945

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVAIIGGGHNGLVTAAYLAKAGLKVAVFERREIVGGASVTEELWPSIKVSTGAYVLSL
CEEEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHCCCCHHHHHHCCCEEECHHHHHHHH
LRPKIIEELKLREFGLKVYLKDPGLFLPFENGKKLYIWSSLEKTKKEIEKFSKNDAKNYK
HHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCCHHHHH
KWVKFWDLFAEMADFFMLNPPPHIDEASNLINIFRGNVNEELALSFLRTFMQDAKSLLDE
HHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YFETDEVKSALAEDSVVGTFASPSTPGTAYVLAHHVIGEVNGVKGAWGYVEGGMGEVTQA
HHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LKRSAEHLGVEIYTNAEVDEVLVKNGRVEGIKLKNGKTINAKIIVSNADPKTTFFKLLRN
HHHHHHHCCEEEEECCCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHC
AELEEDFLRRVRALKNVGVSFKIVGYLEELPDFGNGKSLSPEHIASELIMPNMEYIEKAY
CCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
DDARALGYSREPWLSINIQSSVDPTVAPPGKFSFSIFGQYLVYDSKRNDEMKEKIAEITF
HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEHHEEEEEEEEECCCCHHHHHHHHHHHH
EKIKEFAPNFKPIKYEVLTPLDIERRFGINGGNIFHLDMTPDQLYFFRPLIGYSDYTTPI
HHHHHHCCCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCC
RGLYLCGSGTHPGGGVTGAPGYNAHVKILEDLRKGIYK
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIDVAIIGGGHNGLVTAAYLAKAGLKVAVFERREIVGGASVTEELWPSIKVSTGAYVLSL
CEEEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHCCCCHHHHHHCCCEEECHHHHHHHH
LRPKIIEELKLREFGLKVYLKDPGLFLPFENGKKLYIWSSLEKTKKEIEKFSKNDAKNYK
HHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCEEEEECCHHHHHHHHHHHHCCCHHHHH
KWVKFWDLFAEMADFFMLNPPPHIDEASNLINIFRGNVNEELALSFLRTFMQDAKSLLDE
HHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
YFETDEVKSALAEDSVVGTFASPSTPGTAYVLAHHVIGEVNGVKGAWGYVEGGMGEVTQA
HHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
LKRSAEHLGVEIYTNAEVDEVLVKNGRVEGIKLKNGKTINAKIIVSNADPKTTFFKLLRN
HHHHHHHCCEEEEECCCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCHHHHHHHHHC
AELEEDFLRRVRALKNVGVSFKIVGYLEELPDFGNGKSLSPEHIASELIMPNMEYIEKAY
CCCHHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
DDARALGYSREPWLSINIQSSVDPTVAPPGKFSFSIFGQYLVYDSKRNDEMKEKIAEITF
HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCEEHHEEEEEEEEECCCCHHHHHHHHHHHH
EKIKEFAPNFKPIKYEVLTPLDIERRFGINGGNIFHLDMTPDQLYFFRPLIGYSDYTTPI
HHHHHHCCCCCCEEEEEECCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCC
RGLYLCGSGTHPGGGVTGAPGYNAHVKILEDLRKGIYK
CEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2263648 [H]