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The map label for this gene is ydcM [C]

Identifier: 15898179

GI number: 15898179

Start: 1173626

End: 1174897

Strand: Direct

Name: ydcM [C]

Synonym: SSO1336

Alternate gene names: 15898179

Gene position: 1173626-1174897 (Clockwise)

Preceding gene: 15898178

Following gene: 15898180

Centisome position: 39.22

GC content: 43.55

Gene sequence:

>1272_bases
GTGCTGAAGAACTTAAGGCTTAAGTCATTCCAACCAGAGGAAGAGTACGTGCACTTCACGTACTCCATCAAGAACGACAA
GAGGGAGGAGAGCAAAGAATTAATTAAAGAATACACAACACTACTACAGAAAGCAATTGACTACCTGTGGAGTTTAACGA
AAATACAAGTAAGAAAGAACGGTAATTACAAGATAACACTACCGAAGAAGAAGGAGGTGTACAAACCACTTAGGGATGAA
CTAGAGAAGATCAACCACCTTGCATCACACTACGTCGATAAGGCAATTAATGACGCATTCTCGATCTTGAAGTCGTGGAG
GAAAAGGGCTATAAAGGGGAGAGCTTCGATTGAAAAACCAAGGGTGAAGAAGGCTTACGTTAGGATAAAGACGACTCTGA
GGAAGGTTGTGGGGGAAAGCGTTAGAATAACGGTAAGACCTTATGAGTACATCACCTTCTCGTGGAGTAAGTCATGGTTC
TCAAGAAGGGTTAGGGAGTTGGAACTTGGTGAACCTATAATTAAGGAGGAGAAAGTGTATTTGCCATTTCGTTACAAGTT
ACCCTGGGCAACACCATTAAACTTTCTGGCAATTGACTCCAACCTTTATACTCTAGATGCTTATGATGGTGAGAAATTCG
TTACAATCTCACTAAAGCAGTTGTACTCCCTTAAGTACTCTATGGAGGTGAAGAGGGCTAAGGTGCAATCATTTGCATCA
AAGCACACGAAGAGGGGGAGAGAGTTGTTAAGGAAGTATTCGCATAGGGAGAGGAATCGCGTTCTGGACTTCGTTCACAA
GTTTGTAAACGCGTTGTTGGACTTGTACCCCATGACGTTTTTCGCTGTGGAAAAGCTTAACAAAGAGAGTATGTTTGTAG
ACGCTAATGACTCTCTTTCGAGGAAGATTTCTAGGACTGTTTGGAGGAGTATACACAGAGTGTTGAAGTATAAGGCTCCG
CTTTACGGTTCTTTCGTTAAGGAAGTGAACCCACGCTTTACATCTAGGTCTTGCCCCAGATGTGGGTTTGTATCCCGAAA
GGTTGGTAAGACCTTTGAGTGTGAGAGGTGTGGGTTTAAGTTGGATAGGCAATTGAACGCGTCACTGAATATTTATCTCA
AGATGTGCGGATTCCCTCACATCCGTGATATAGCACGGGTGTGGGTTGGGGTTATTCCGCTAATGGGGCGAAGAGGGATG
AACGGGTTTCCCCGTGACTTTGGTGAAGCCCAAGGGCTGAGGATTGATATTAAATATCATGAAATCCCATGA

Upstream 100 bases:

>100_bases
AAAGAAGAAGAATTGGTCGAAGACTTAGTCTCAATACTACTCTCATTCAGTGGGAAACTACATGGCATGAGAAGTCATAA
ATACGAGAAGGTGAAGAAAT

Downstream 100 bases:

>100_bases
AGCCCAAACCCCAATTTAGGCTGGGGATTTGAACTATTCGATTTAGTAGTCTACCTATATGTTGCAACTACAATATCTCC
TCTATTCTTTCCTTCTTCAA

Product: second ORF in transposon ISC1778

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLRDE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLSRKISRTVWRSIHRVLKYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP

Sequences:

>Translated_423_residues
MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLRDE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLSRKISRTVWRSIHRVLKYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP
>Mature_423_residues
MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKNGNYKITLPKKKEVYKPLRDE
LEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKPRVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWF
SRRVRELELGEPIIKEEKVYLPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLSRKISRTVWRSIHRVLKYKAP
LYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFKLDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGM
NGFPRDFGEAQGLRIDIKYHEIP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095 [H]

Pfam domain/function: PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 50129; Mature: 50129

Theoretical pI: Translated: 10.61; Mature: 10.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKN
CCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GNYKITLPKKKEVYKPLRDELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKVY
CHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEE
LPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RKISRTVWRSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCH
LDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIKYH
HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
EIP
CCC
>Mature Secondary Structure
MLKNLRLKSFQPEEEYVHFTYSIKNDKREESKELIKEYTTLLQKAIDYLWSLTKIQVRKN
CCCCCCCCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEC
GNYKITLPKKKEVYKPLRDELEKINHLASHYVDKAINDAFSILKSWRKRAIKGRASIEKP
CCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
RVKKAYVRIKTTLRKVVGESVRITVRPYEYITFSWSKSWFSRRVRELELGEPIIKEEKVY
CHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEECCHHHHHHHHHHHHCCCCCCCCCEEE
LPFRYKLPWATPLNFLAIDSNLYTLDAYDGEKFVTISLKQLYSLKYSMEVKRAKVQSFAS
EEEEEECCCCCCCCEEEECCCEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
KHTKRGRELLRKYSHRERNRVLDFVHKFVNALLDLYPMTFFAVEKLNKESMFVDANDSLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHH
RKISRTVWRSIHRVLKYKAPLYGSFVKEVNPRFTSRSCPRCGFVSRKVGKTFECERCGFK
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCHHHCCCH
LDRQLNASLNIYLKMCGFPHIRDIARVWVGVIPLMGRRGMNGFPRDFGEAQGLRIDIKYH
HCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC
EIP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]