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The map label for this gene is gctB [H]

Identifier: 15897950

GI number: 15897950

Start: 941457

End: 942194

Strand: Reverse

Name: gctB [H]

Synonym: SSO1085

Alternate gene names: 15897950

Gene position: 942194-941457 (Counterclockwise)

Preceding gene: 15897952

Following gene: 15897948

Centisome position: 31.49

GC content: 35.64

Gene sequence:

>738_bases
ATGAAAAGTTACAATGTAGATTATGTCATAAAGGCTATTTCGACATTATTAGAAGATGGAGAATTAGTCTATATTGGCCT
GAACTCAATACCTTCACTAATTGCGTCTTTCATGGCCAGAGACCTTTACAGAAAAAAGATAAGAATAATAGGAGTAGCAG
AAGCCTCAAATCCATCAAGAGTAGTATTATCGCCATCTACAGGGAACCCATTCTTTGTGGAAGCCTCTCCAGTTATGATT
ACTGCTGACGCATTCGACCTCGCACAGAAAGGTAAACTAGATGTCATGTTCTTAGGTCCAGCACAAATAGACGAGGAAAC
TAATGTAAATTTAACTATGATTGGAAATGAATACCATAATCCTAAAGTTAAATTACCAGGTGGAGCAGCTACAGCATTTA
TCCTACCTCTTTCTAGAAAGGCAATCTTATGGAACCTAAAACACTCTAAAAGATCTCTTGTCAGAAGGGTGGACTTCATA
ACTGGAACAGCAAAGTTTTCAAATAATAAAGTATTTGTGGTGACTAATTTGGGAGTTTTAGCATATAATAGAGAGGAAAG
GAAATGGTACTTAGAGGCAATCTATCCATTTAGCTCATATGAGAAAGTAGTGGAGAATACTGACTTTGAGGTAAAGAGAA
AAGATAGCGAAAGGTTAATAGATCTAACTGATGAAGATTTGAGATTCATTAATTATATGGATCCTTATAACCTTAGAAGT
GCTCTAGAAACTCTATAA

Upstream 100 bases:

>100_bases
CCTTGAATTACGTGCTCTACACCAGCTATGTAATAATCACCTATCTTGTAAACCTTTACCATCAATATCTTTAATAACGC
GTAAAAACTTAAAATTATTC

Downstream 100 bases:

>100_bases
TTTTCTCGTAATCTGCATCATAAAGTGGGAACATACTAGTCGGCTCTGCACCCTTTGGTGCGTGAACCACAGCAGTAACG
TATTCTCCATTAATAGTCGG

Product: glutaconate CoA-transferase, subunit B (gctB)

Products: NA

Alternate protein names: GCT small subunit [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKSYNVDYVIKAISTLLEDGELVYIGLNSIPSLIASFMARDLYRKKIRIIGVAEASNPSRVVLSPSTGNPFFVEASPVMI
TADAFDLAQKGKLDVMFLGPAQIDEETNVNLTMIGNEYHNPKVKLPGGAATAFILPLSRKAILWNLKHSKRSLVRRVDFI
TGTAKFSNNKVFVVTNLGVLAYNREERKWYLEAIYPFSSYEKVVENTDFEVKRKDSERLIDLTDEDLRFINYMDPYNLRS
ALETL

Sequences:

>Translated_245_residues
MKSYNVDYVIKAISTLLEDGELVYIGLNSIPSLIASFMARDLYRKKIRIIGVAEASNPSRVVLSPSTGNPFFVEASPVMI
TADAFDLAQKGKLDVMFLGPAQIDEETNVNLTMIGNEYHNPKVKLPGGAATAFILPLSRKAILWNLKHSKRSLVRRVDFI
TGTAKFSNNKVFVVTNLGVLAYNREERKWYLEAIYPFSSYEKVVENTDFEVKRKDSERLIDLTDEDLRFINYMDPYNLRS
ALETL
>Mature_245_residues
MKSYNVDYVIKAISTLLEDGELVYIGLNSIPSLIASFMARDLYRKKIRIIGVAEASNPSRVVLSPSTGNPFFVEASPVMI
TADAFDLAQKGKLDVMFLGPAQIDEETNVNLTMIGNEYHNPKVKLPGGAATAFILPLSRKAILWNLKHSKRSLVRRVDFI
TGTAKFSNNKVFVVTNLGVLAYNREERKWYLEAIYPFSSYEKVVENTDFEVKRKDSERLIDLTDEDLRFINYMDPYNLRS
ALETL

Specific function: Catalyzes the transfer of the CoA moiety from acetyl-CoA to (R)-2-hydroxyglutarate and related compounds like glutaconate [H]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: =2.8.3.12 [H]

Molecular weight: Translated: 27742; Mature: 27742

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSYNVDYVIKAISTLLEDGELVYIGLNSIPSLIASFMARDLYRKKIRIIGVAEASNPSR
CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCE
VVLSPSTGNPFFVEASPVMITADAFDLAQKGKLDVMFLGPAQIDEETNVNLTMIGNEYHN
EEEECCCCCEEEEECCCEEEEECHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCC
PKVKLPGGAATAFILPLSRKAILWNLKHSKRSLVRRVDFITGTAKFSNNKVFVVTNLGVL
CEEEECCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHEEEEEEECCCEEEEEEECCEE
AYNREERKWYLEAIYPFSSYEKVVENTDFEVKRKDSERLIDLTDEDLRFINYMDPYNLRS
EEECHHHEEEEEEECCCHHHHHHHCCCCCEEEECCCCEEEECCCCCEEEEECCCCHHHHH
ALETL
HHHCC
>Mature Secondary Structure
MKSYNVDYVIKAISTLLEDGELVYIGLNSIPSLIASFMARDLYRKKIRIIGVAEASNPSR
CCCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCEEEEEEEEECCCCCE
VVLSPSTGNPFFVEASPVMITADAFDLAQKGKLDVMFLGPAQIDEETNVNLTMIGNEYHN
EEEECCCCCEEEEECCCEEEEECHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCC
PKVKLPGGAATAFILPLSRKAILWNLKHSKRSLVRRVDFITGTAKFSNNKVFVVTNLGVL
CEEEECCCCEEEEEEECCCEEEEEECCHHHHHHHHHHHHEEEEEEECCCEEEEEEECCEE
AYNREERKWYLEAIYPFSSYEKVVENTDFEVKRKDSERLIDLTDEDLRFINYMDPYNLRS
EEECHHHEEEEEEECCCHHHHHHHCCCCCEEEECCCCEEEECCCCCEEEEECCCCHHHHH
ALETL
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7957258; 9083111 [H]