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The map label for this gene is hycC [H]

Identifier: 15897889

GI number: 15897889

Start: 879264

End: 881129

Strand: Reverse

Name: hycC [H]

Synonym: SSO1021

Alternate gene names: 15897889

Gene position: 881129-879264 (Counterclockwise)

Preceding gene: 15897890

Following gene: 15897888

Centisome position: 29.45

GC content: 35.96

Gene sequence:

>1866_bases
TTGCGCTATCTCAGGAGGAATAATAGGCGAAGGAGTACCATTAGAAGCAGTAGTGGAAATCCCCGGTTGTCCACCAAATC
CCTTTACAATACTCGAAGCCTTGATGAAGGTGAAGGGAAAATGAACACGCTACTCTATACATTACCCCCATTTCTAATTT
CTATTATATTCTCAATCTTTAATAAAAAAGCGGGATATATCTTGACAATGATATCATCAATAATACTACTTATCACCTCG
ATTTACGAATATAATGGAGTTCTCTCATTCTTCTCCATAATTTCTACCTCAGTGTGGATTCTTGCCTCAATTTTCTCAAT
AGAGTACGATCATTACGGGAAATGGCTCTCCCCCTTATACATACTAACAATCTTAGGCATGACCATTGTCTTAAACTCTG
ATGGTTATCTGTTATTCCTCGCAGGATGGGAAATAATGACAATCCCAGCATATGTAGCAATAGGTCTAACAGCAAAGAAT
AATAGACCACCATTCGTTTTCATGGCATTTGGAGAGCTGAGTACAGTTCTCATTTTAGCGGGATTTATAATAGCAAACAC
TACAAACTTCAATTACTTGCCATCTCCAGTTCCCTTGATTGTCGCTACTTTTGGATTCATAATAAAAATGGGAATGATGC
CTTTCCTTGTATCGGAATGGCTACCTATAGCACATGGAACAGCACCATCAAACTTTTCTGCAATACTAAGTGCCACAATG
ACGCTAATGGGGGTTTACGGAATACTAAAAATTACAATTTTAACACAAACTATTCCGATTGGATTTTCACTTACAATAAT
GGCCATAGGTGCATTTAGCATATTCTTTGGAGCACTTTACGGATACGTAAATGAGAACACTAAGGGAATTTTAGCCTTTA
GTACAATAGAAAATAACGGGGCAATACTAGTAGCCTTAAGTCTATACATGATCTCAAAGCAACTAAACATTACCTCAATA
GAGCACATTTCCTTAATCACTGTAATTTTATACTCATTCGCACACTCAGTAGCCAAAACTGGACTATTCCTCTCTTCTGG
CTTACAAGAAAAACAGAGCATAACTTATTCAAAAAAGATAAGAAACATTGAAATAGGACTAACCCTATTGGCTTCCTCCA
TGTCTGGACTATTGCCGAATATAGGGGGAGTAGCATCTTGGCTATTACTTGAAAACCTATTCATGTTCTCATACGTACTT
CATAACATGATATCTATCCTCTTCATAATGACTGGAGCAATTATCGCAATGGGAGAAGGTCTAGCAACAGCCTTATTAAT
TAGATACATAACGTATACATCAATATTTCAGAATACAAGAGAACAATTAAGTAAAATAAAGAAATATCCCATCTTATTAT
CTGCACTTATAGTACTCATACTGGGATTCACGTTACCTTATTTGATATACCCTTATAAAAACTCTACAACAATTCTAGGA
ATGCTAACCAATAGCGTGATTCTAACACAATACTATAACACCACATTCGGAGGAATATCGCCACTCTACATAATTTTACT
ATTAGTAGCCTTCTCTATTGTAAGCTATCTCGCCTTTGGAAAGCCTAAAATAAGAAAAGCAGAAACGTGGAACAATGGGG
TAAACGAGAAAGAAGAATACACAGCATTTGCAATGGCAAATAACATAAGACAAATGCTAAAGAAAATCTTAAGGCCAGAA
GAAGAGAAATTCTTACCTACATACGGTTTAGATGTATTCTGGGAATACCTCTACAAACTAGCAAATTCAATAAGAAGATT
TGGGAAGATTTTCGCTAAAACACTTATCAACAGCTCAATCTCATGGTACATTATATACATTATTTTGACGCTCATTGTAG
TAATAATAGTAGTTGTAATGGGGTGA

Upstream 100 bases:

>100_bases
CATTAGTAGTAATGGGGGTAATGACAGAGAAAATGAAAGAAGTGTTAAAAAAAGCTTATGAAGCAATGCCAGAACCCAAA
GTAGTTATATTATTAGGTGC

Downstream 100 bases:

>100_bases
AACTATTACATGTTCAAAAGAAAAAGAACTAAAGGAGAAAATAGAGGAGAAGATAAGGAGAATAGAGGAACTGAAGAGGA
GAATAGAGGAAACGAGAAGA

Product: hydrogenase 4 subunit B

Products: H2; oxidized ferredoxin [C]

Alternate protein names: NA

Number of amino acids: Translated: 621; Mature: 621

Protein sequence:

>621_residues
MRYLRRNNRRRSTIRSSSGNPRLSTKSLYNTRSLDEGEGKMNTLLYTLPPFLISIIFSIFNKKAGYILTMISSIILLITS
IYEYNGVLSFFSIISTSVWILASIFSIEYDHYGKWLSPLYILTILGMTIVLNSDGYLLFLAGWEIMTIPAYVAIGLTAKN
NRPPFVFMAFGELSTVLILAGFIIANTTNFNYLPSPVPLIVATFGFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATM
TLMGVYGILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNGAILVALSLYMISKQLNITSI
EHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKIRNIEIGLTLLASSMSGLLPNIGGVASWLLLENLFMFSYVL
HNMISILFIMTGAIIAMGEGLATALLIRYITYTSIFQNTREQLSKIKKYPILLSALIVLILGFTLPYLIYPYKNSTTILG
MLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIRKAETWNNGVNEKEEYTAFAMANNIRQMLKKILRPE
EEKFLPTYGLDVFWEYLYKLANSIRRFGKIFAKTLINSSISWYIIYIILTLIVVIIVVVMG

Sequences:

>Translated_621_residues
MRYLRRNNRRRSTIRSSSGNPRLSTKSLYNTRSLDEGEGKMNTLLYTLPPFLISIIFSIFNKKAGYILTMISSIILLITS
IYEYNGVLSFFSIISTSVWILASIFSIEYDHYGKWLSPLYILTILGMTIVLNSDGYLLFLAGWEIMTIPAYVAIGLTAKN
NRPPFVFMAFGELSTVLILAGFIIANTTNFNYLPSPVPLIVATFGFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATM
TLMGVYGILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNGAILVALSLYMISKQLNITSI
EHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKIRNIEIGLTLLASSMSGLLPNIGGVASWLLLENLFMFSYVL
HNMISILFIMTGAIIAMGEGLATALLIRYITYTSIFQNTREQLSKIKKYPILLSALIVLILGFTLPYLIYPYKNSTTILG
MLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIRKAETWNNGVNEKEEYTAFAMANNIRQMLKKILRPE
EEKFLPTYGLDVFWEYLYKLANSIRRFGKIFAKTLINSSISWYIIYIILTLIVVIIVVVMG
>Mature_621_residues
MRYLRRNNRRRSTIRSSSGNPRLSTKSLYNTRSLDEGEGKMNTLLYTLPPFLISIIFSIFNKKAGYILTMISSIILLITS
IYEYNGVLSFFSIISTSVWILASIFSIEYDHYGKWLSPLYILTILGMTIVLNSDGYLLFLAGWEIMTIPAYVAIGLTAKN
NRPPFVFMAFGELSTVLILAGFIIANTTNFNYLPSPVPLIVATFGFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATM
TLMGVYGILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNGAILVALSLYMISKQLNITSI
EHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKIRNIEIGLTLLASSMSGLLPNIGGVASWLLLENLFMFSYVL
HNMISILFIMTGAIIAMGEGLATALLIRYITYTSIFQNTREQLSKIKKYPILLSALIVLILGFTLPYLIYPYKNSTTILG
MLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIRKAETWNNGVNEKEEYTAFAMANNIRQMLKKILRPE
EEKFLPTYGLDVFWEYLYKLANSIRRFGKIFAKTLINSSISWYIIYIILTLIVVIIVVVMG

Specific function: Unknown

COG id: COG0651

COG function: function code CP; Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 5 family [H]

Homologues:

Organism=Escherichia coli, GI1788827, Length=282, Percent_Identity=30.1418439716312, Blast_Score=109, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001750
- InterPro:   IPR003918 [H]

Pfam domain/function: PF00361 Oxidored_q1 [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 69447; Mature: 69447

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYLRRNNRRRSTIRSSSGNPRLSTKSLYNTRSLDEGEGKMNTLLYTLPPFLISIIFSIF
CCCHHHCCCHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NKKAGYILTMISSIILLITSIYEYNGVLSFFSIISTSVWILASIFSIEYDHYGKWLSPLY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ILTILGMTIVLNSDGYLLFLAGWEIMTIPAYVAIGLTAKNNRPPFVFMAFGELSTVLILA
HHHHHHHHEEECCCCCEEEEECCHHEEEHHHHEEEEEECCCCCCEEEEEHHHHHHHHHHH
GFIIANTTNFNYLPSPVPLIVATFGFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATM
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
TLMGVYGILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
AILVALSLYMISKQLNITSIEHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKI
EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RNIEIGLTLLASSMSGLLPNIGGVASWLLLENLFMFSYVLHNMISILFIMTGAIIAMGEG
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LATALLIRYITYTSIFQNTREQLSKIKKYPILLSALIVLILGFTLPYLIYPYKNSTTILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEE
MLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIRKAETWNNGVNEKEEY
EHHCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
TAFAMANNIRQMLKKILRPEEEKFLPTYGLDVFWEYLYKLANSIRRFGKIFAKTLINSSI
HHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SWYIIYIILTLIVVIIVVVMG
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRYLRRNNRRRSTIRSSSGNPRLSTKSLYNTRSLDEGEGKMNTLLYTLPPFLISIIFSIF
CCCHHHCCCHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
NKKAGYILTMISSIILLITSIYEYNGVLSFFSIISTSVWILASIFSIEYDHYGKWLSPLY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
ILTILGMTIVLNSDGYLLFLAGWEIMTIPAYVAIGLTAKNNRPPFVFMAFGELSTVLILA
HHHHHHHHEEECCCCCEEEEECCHHEEEHHHHEEEEEECCCCCCEEEEEHHHHHHHHHHH
GFIIANTTNFNYLPSPVPLIVATFGFIIKMGMMPFLVSEWLPIAHGTAPSNFSAILSATM
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
TLMGVYGILKITILTQTIPIGFSLTIMAIGAFSIFFGALYGYVNENTKGILAFSTIENNG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
AILVALSLYMISKQLNITSIEHISLITVILYSFAHSVAKTGLFLSSGLQEKQSITYSKKI
EEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
RNIEIGLTLLASSMSGLLPNIGGVASWLLLENLFMFSYVLHNMISILFIMTGAIIAMGEG
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
LATALLIRYITYTSIFQNTREQLSKIKKYPILLSALIVLILGFTLPYLIYPYKNSTTILG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEE
MLTNSVILTQYYNTTFGGISPLYIILLLVAFSIVSYLAFGKPKIRKAETWNNGVNEKEEY
EHHCCEEEEEHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
TAFAMANNIRQMLKKILRPEEEKFLPTYGLDVFWEYLYKLANSIRRFGKIFAKTLINSSI
HHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
SWYIIYIILTLIVVIIVVVMG
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton; reduced ferredoxin [C]

Specific reaction: Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 2016588 [H]