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The map label for this gene is ymdB [H]

Identifier: 15926871

GI number: 15926871

Start: 1284212

End: 1285009

Strand: Direct

Name: ymdB [H]

Synonym: SA1130

Alternate gene names: 15926871

Gene position: 1284212-1285009 (Clockwise)

Preceding gene: 15926869

Following gene: 15926872

Centisome position: 45.62

GC content: 34.59

Gene sequence:

>798_bases
ATGAGAATAATGTTTATAGGGGATATCGTAGGTAAAATTGGACGAGACGCAATTGAAACGTACATACCTCAACTGAAGCA
AAAGTATAAACCAACAGTTACAATTGTAAATGCTGAAAATGCAGCACATGGTAAAGGTTTGACTGAAAAAATATATAAAC
AATTACTAAGAAATGGTGTAGATTTCATGACTATGGGTAATCACACATATGGTCAACGTGAAATTTATGATTTTATAGAT
GAAGCAAAACGACTAGTAAGACCAGCGAATTTTCCGGATGAAGCGCCGGGAATTGGTATGAGATTTATACAAATTAATGA
TATTAAACTTGCAGTTATTAATCTGCAAGGAAGAGCGTTTATGCCAGATATTGATGATCCTTTTAAAAAGGCAGATCAAT
TAGTCAAGGAAGCACAAGAACAAACTCCGTTTATATTTGTTGATTTTCATGCAGAAACAACTTCTGAAAAGTATGCAATG
GGATGGCATTTAGATGGTAGAGCTAGCGCTGTTGTTGGAACGCATACACACATTCAAACAGCAGATGAACGTATTTTACC
AAAGGGGACAGGGTATATAACGGATGTTGGTATGACAGGTTTTTATGACGGCATTTTAGGAATAAATAAAACAGAGGTAA
TTGAGCGTTTTATCACTAGTTTGCCACAAAGACATGTTGTTCCAAATGAAGGTAGAAGTGTATTATCTGGTGTTGTTATT
GATTTAGACAAAGAAGGTAAAACAAAGCACATCGAACGTATATTGATAAATGATGACCATCCATTTTCAACATTTTAA

Upstream 100 bases:

>100_bases
CTCTCTATAATTGAAGAAAAATAATTCAAAGAATTTAATATTTACTTTAAATATTAGAACGTATGAATTAAACTAGTATT
TATGAGAGGATGAACAAAAC

Downstream 100 bases:

>100_bases
AATTACGTAAGTAAACATTCGAATTGGACCCTATCGTCCATTAGTATGAATTTAATATAGTACCACTGTTTACATAGTAA
ATCGGTGGTTCTTTTTGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHGKGLTEKIYKQLLRNGVDFMTMGNHTYGQREIYDFID
EAKRLVRPANFPDEAPGIGMRFIQINDIKLAVINLQGRAFMPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAM
GWHLDGRASAVVGTHTHIQTADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFITSLPQRHVVPNEGRSVLSGVVI
DLDKEGKTKHIERILINDDHPFSTF

Sequences:

>Translated_265_residues
MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHGKGLTEKIYKQLLRNGVDFMTMGNHTYGQREIYDFID
EAKRLVRPANFPDEAPGIGMRFIQINDIKLAVINLQGRAFMPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAM
GWHLDGRASAVVGTHTHIQTADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFITSLPQRHVVPNEGRSVLSGVVI
DLDKEGKTKHIERILINDDHPFSTF
>Mature_265_residues
MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHGKGLTEKIYKQLLRNGVDFMTMGNHTYGQREIYDFID
EAKRLVRPANFPDEAPGIGMRFIQINDIKLAVINLQGRAFMPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAM
GWHLDGRASAVVGTHTHIQTADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFITSLPQRHVVPNEGRSVLSGVVI
DLDKEGKTKHIERILINDDHPFSTF

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29876; Mature: 29876

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHGKGLTEKIYKQLLRNGV
CEEEEEHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
DFMTMGNHTYGQREIYDFIDEAKRLVRPANFPDEAPGIGMRFIQINDIKLAVINLQGRAF
CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCEE
MPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAMGWHLDGRASAVVGTHTHIQT
CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCEEEC
ADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFITSLPQRHVVPNEGRSVLSGVVI
CCHHCCCCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCEEE
DLDKEGKTKHIERILINDDHPFSTF
EECCCCCHHHHHEEEECCCCCCCCC
>Mature Secondary Structure
MRIMFIGDIVGKIGRDAIETYIPQLKQKYKPTVTIVNAENAAHGKGLTEKIYKQLLRNGV
CEEEEEHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
DFMTMGNHTYGQREIYDFIDEAKRLVRPANFPDEAPGIGMRFIQINDIKLAVINLQGRAF
CEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCEEEEEEEECCCEE
MPDIDDPFKKADQLVKEAQEQTPFIFVDFHAETTSEKYAMGWHLDGRASAVVGTHTHIQT
CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCCEEEECCCEEEC
ADERILPKGTGYITDVGMTGFYDGILGINKTEVIERFITSLPQRHVVPNEGRSVLSGVVI
CCHHCCCCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCEEE
DLDKEGKTKHIERILINDDHPFSTF
EECCCCCHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]