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The map label for this gene is rplY

Identifier: 15926178

GI number: 15926178

Start: 529681

End: 530334

Strand: Direct

Name: rplY

Synonym: SA0459

Alternate gene names: 15926178

Gene position: 529681-530334 (Clockwise)

Preceding gene: 15926177

Following gene: 15926179

Centisome position: 18.82

GC content: 37.46

Gene sequence:

>654_bases
ATGGCTTCATTAAAGTCAATCATCCGTCAAGGTAAACAAACACGTTCAGATCTTAAACAATTAAGAAAATCTGGTAAAGT
ACCAGCAGTAGTATACGGTTACGGTACTAAAAACGTGTCAGTTAAAGTTGATGAAGTAGAATTCATCAAAGTTATCCGTG
AAGTAGGTCGTAACGGTGTTATCGAATTAGGCGTTGGTTCTAAAACTATCAAAGTTATGGTTGCAGACTACCAATTCGAT
CCACTTAAAAACCAAATTACTCACATTGACTTCTTAGCAATCAATATGAGTGAAGAACGTACTGTTGAAGTACCAGTTCA
ATTAGTTGGTGAAGCAGTAGGCGCTAAAGAAGGCGGCGTAGTTGAACAACCATTATTCAACTTAGAAGTAACTGCTACTC
CAGACAATATTCCAGAAGCAATCGAAGTAGACATTACTGAATTAAACATTAACGACAGTTTAACTGTTGCTGATGTTAAA
GTAACTGGCGACTTCAAAATCGAAAACGATTCAGCTGAATCAGTTGTAACAGTAGTTGCTCCAACTGAAGAACCAACTGA
AGAAGAAATCGAAGCTATGGAAGGCGAACAACAAACTGAAGAACCAGAAGTTGTTGGCGAAAGCAAAGAAGACGAAGAAA
AAACTGAAGAGTAA

Upstream 100 bases:

>100_bases
GTTCGTGATTATACGAATAAATAAACACTTGCAAGCAACGATGATGTTGATGGGTAAGTGAGGTGCTCGTTTTGAGCAAA
AATGAAAGGTGGAAATGAGA

Downstream 100 bases:

>100_bases
TTTTAATCTGTTACATTAAAGTTTTTATACTTTGTTTAACAAGCACTGTGCTTATTTTAATATAAGCATGGTGCTTTTTG
TGTTATTATAAAGCTTAATT

Product: 50S ribosomal protein L25/general stress protein Ctc

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFD
PLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVK
VTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE

Sequences:

>Translated_217_residues
MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFD
PLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVK
VTGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
>Mature_216_residues
ASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGVIELGVGSKTIKVMVADYQFDP
LKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGVVEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKV
TGDFKIENDSAESVVTVVAPTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_STAA3 (Q2FJE0)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_493188.1
- ProteinModelPortal:   Q2FJE0
- SMR:   Q2FJE0
- STRING:   Q2FJE0
- EnsemblBacteria:   EBSTAT00000036500
- GeneID:   3913178
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_0479
- eggNOG:   COG1825
- GeneTree:   EBGT00050000024887
- HOGENOM:   HBG731986
- OMA:   LNIVRHE
- ProtClustDB:   PRK05618
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 23788; Mature: 23657

Theoretical pI: Translated: 4.08; Mature: 4.08

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
CCHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHCCCCE
IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
EEECCCCEEEEEEEECCCCCCCHHCCEEEEEEEEECCCCCEEECCHHHHHHHHCCCCCCE
VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
ECCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEECCEEECCCCCCEEEEEEE
PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
ASLKSIIRQGKQTRSDLKQLRKSGKVPAVVYGYGTKNVSVKVDEVEFIKVIREVGRNGV
CHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHHHHCCCCE
IELGVGSKTIKVMVADYQFDPLKNQITHIDFLAINMSEERTVEVPVQLVGEAVGAKEGGV
EEECCCCEEEEEEEECCCCCCCHHCCEEEEEEEEECCCCCEEECCHHHHHHHHCCCCCCE
VEQPLFNLEVTATPDNIPEAIEVDITELNINDSLTVADVKVTGDFKIENDSAESVVTVVA
ECCCCEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEEEECCEEECCCCCCEEEEEEE
PTEEPTEEEIEAMEGEQQTEEPEVVGESKEDEEKTEE
CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA