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The map label for this gene is yciT [H]

Identifier: 15675824

GI number: 15675824

Start: 1711358

End: 1712104

Strand: Reverse

Name: yciT [H]

Synonym: SPy_2054

Alternate gene names: 15675824

Gene position: 1712104-1711358 (Counterclockwise)

Preceding gene: 15675826

Following gene: 15675823

Centisome position: 92.42

GC content: 41.23

Gene sequence:

>747_bases
ATGAATCGATTAGAACGTATTATTCAACTGGTTTCCCAGAAGAAAAAAATAGATGTTAACAGTTTATCAGAGCAATTAGA
CGTTTCGAAAGTAACCATTCGAAAAGACCTTGATAAGCTTGAAAGTAAGGGCTTGTTGCGACGGGAACATGGCTATGCGG
TGCTAAACAGTGGCGATGACCTCAATGTACGCTTGTCCTACAATTACAACATAAAGCGACGGATTGCAGAAAAAGCAGCT
GAATTGGTACAAGACAACGATACCATTATGATTGAATCTGGCTCAACCTGTGCCCTTTTGGCAGAAGTGCTTTGCCAGAC
CAAACGAAATATTAAAGTCATTACCAATTCGTGCTTCATTGCCAACTACATTCGTCAATATAGTAGCTGTCAAATCATTT
TACTGGGCGGTTATTACCAGCCCAATTCAGAGGTGACTGTTGGTCCTTTATTGAAAGAAATGATATCCCTTTTTCATGTC
AATCGTGTCTTTGTTGGAACAGACGGTTTCAACAAAGATCTTGGCTTTATGGGCAAGGACATGATGCGCTCAGAAGGGGT
GCGTTACATGGCAGATGCTGCTGAGGAAGTGGTGATTCTGACCGATTCCAGCAAGTTTTCAAAAACCAGTCTGGTACACC
AGTTGTCATTAGCTGATGTCAATCGCGTCATTACAGACCAAGCACTAGACAAGCAAACACAAGAGTTATTAAGTGCTAGT
GGTCTTGTTCTTGATTTTGTTTCTTAG

Upstream 100 bases:

>100_bases
ACTATCATACCAGATAAACGTAAATAAATCAATTACGAATGAAAGTAAATATCCCTTTTCTTTTAAGAAAATAACTGGTA
CAATGAAAGGGAGGTGAATG

Downstream 100 bases:

>100_bases
AAAATAGGTGGCTAGATGAAAGAAGAACGCAGACGGCTCCTTGCCAAGGTGGCTTACTTGCATTATGTTCAAGGCAAGAG
CCAAACCTTGATTTCAAAGG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKAA
ELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHV
NRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
GLVLDFVS

Sequences:

>Translated_248_residues
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKAA
ELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHV
NRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
GLVLDFVS
>Mature_248_residues
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDDLNVRLSYNYNIKRRIAEKAA
ELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFIANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHV
NRVFVGTDGFNKDLGFMGKDMMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
GLVLDFVS

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=228, Percent_Identity=44.2982456140351, Blast_Score=193, Evalue=8e-51,
Organism=Escherichia coli, GI1789059, Length=244, Percent_Identity=31.5573770491803, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=28.0487804878049, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788069, Length=232, Percent_Identity=31.0344827586207, Blast_Score=104, Evalue=5e-24,
Organism=Escherichia coli, GI1789829, Length=247, Percent_Identity=27.9352226720648, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1789170, Length=231, Percent_Identity=27.7056277056277, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI87082344, Length=230, Percent_Identity=24.7826086956522, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790635, Length=246, Percent_Identity=26.4227642276423, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI226510968, Length=243, Percent_Identity=25.5144032921811, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790753, Length=252, Percent_Identity=24.6031746031746, Blast_Score=85, Evalue=6e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27835; Mature: 27835

Theoretical pI: Translated: 7.38; Mature: 7.38

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCC
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI
EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECHHHH
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
HHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCHH
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
HHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLVLDFVS
CCEEEECC
>Mature Secondary Structure
MNRLERIIQLVSQKKKIDVNSLSEQLDVSKVTIRKDLDKLESKGLLRREHGYAVLNSGDD
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCC
LNVRLSYNYNIKRRIAEKAAELVQDNDTIMIESGSTCALLAEVLCQTKRNIKVITNSCFI
EEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECHHHH
ANYIRQYSSCQIILLGGYYQPNSEVTVGPLLKEMISLFHVNRVFVGTDGFNKDLGFMGKD
HHHHHHHCCCEEEEEECEECCCCCEEHHHHHHHHHHHHHHCEEEEECCCCCCCHHHCCHH
MMRSEGVRYMADAAEEVVILTDSSKFSKTSLVHQLSLADVNRVITDQALDKQTQELLSAS
HHHHCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GLVLDFVS
CCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]