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The map label for this gene is sorC [H]

Identifier: 15675823

GI number: 15675823

Start: 1710362

End: 1711342

Strand: Reverse

Name: sorC [H]

Synonym: SPy_2053

Alternate gene names: 15675823

Gene position: 1711342-1710362 (Counterclockwise)

Preceding gene: 15675824

Following gene: 15675822

Centisome position: 92.38

GC content: 41.79

Gene sequence:

>981_bases
ATGAAAGAAGAACGCAGACGGCTCCTTGCCAAGGTGGCTTACTTGCATTATGTTCAAGGCAAGAGCCAAACCTTGATTTC
AAAGGAAATGAATATCTACCGAACAACGGTTTGTCGGATGTTAGCAAAAGCCAAGGAAGAAGGCATTGTTCGGATTGAAA
TTGCCGACTATGATGCTGATTTATTTGCTTTAGAAGAATACGTGCGACAGCAGTATGGCTTGGAAAAACTAGACCTTGTG
CCCAACCAGGTTGAAGATACCCCAATGGATACCTTGACAAATGTTGCTAAAACAGCAGCTGAGGTTTTTAGACATGTTGT
TAAAGATGGCGATAAGATCGGTCTGTCCTGGGGAGCGACTCTTTCTTGCTTGATGGATGAGTTAAATCCAAAAGCGATGA
AAGATGTGTTTATTTATCCTTTGGCAGGAGGACCTAGCCATATTAATGCCAAATACCATGTCAATACCCTGGTTTACCGC
TTGGCTCGCATCTTTCATGGTAATAGCGCTTTTATGAACGCTATGGTCATTCAAGAAGACAAACACTTGGCTAAGGGAAT
CTTACAATCTAAATACTTTAACGACATTTTAACAAGCTGGGACCAGTTAGATCTTGCCTTAGTAGGAATTGGTGGGGAGC
CTAATAGCCTTGAGCAGAGCCAATGGCGTGATTTATTAACCAGCTCAGATCATGACCAACTCAAATATGAAAAAGCCGTT
GGTGAAGTTTGTTGCCGTTTCTTTGATCAGGCAGGTCAGCCAGTTTACACTGGCCTACAGGATCGAACTATTGGTATTTC
ACTAGAACAGTTGAGGCGTGTCCCCAAAACAATGGCTGTTGCAACAGGTAAACACAAGGCTAAGGCAATATTGGCAGCCT
TAAAAGCAGGTTTTATCAATTATCTAGTGACGGATAAAGAGACCATGCTAGCTGTTTTAGCGTTAGATGAAGATATTGAT
CTTAATAACGTTCTTCTTTAA

Upstream 100 bases:

>100_bases
TCGCGTCATTACAGACCAAGCACTAGACAAGCAAACACAAGAGTTATTAAGTGCTAGTGGTCTTGTTCTTGATTTTGTTT
CTTAGAAAATAGGTGGCTAG

Downstream 100 bases:

>100_bases
TAGAAATTCAAAAATACTATGATATTTATAGAGGCCCAAGACCAAACGGTCAGGGCTTTTTTTGTTTGATGTGTTGATAA
AACAGAGATTGCTCAAATGT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: Sor operon activator [H]

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKEERRRLLAKVAYLHYVQGKSQTLISKEMNIYRTTVCRMLAKAKEEGIVRIEIADYDADLFALEEYVRQQYGLEKLDLV
PNQVEDTPMDTLTNVAKTAAEVFRHVVKDGDKIGLSWGATLSCLMDELNPKAMKDVFIYPLAGGPSHINAKYHVNTLVYR
LARIFHGNSAFMNAMVIQEDKHLAKGILQSKYFNDILTSWDQLDLALVGIGGEPNSLEQSQWRDLLTSSDHDQLKYEKAV
GEVCCRFFDQAGQPVYTGLQDRTIGISLEQLRRVPKTMAVATGKHKAKAILAALKAGFINYLVTDKETMLAVLALDEDID
LNNVLL

Sequences:

>Translated_326_residues
MKEERRRLLAKVAYLHYVQGKSQTLISKEMNIYRTTVCRMLAKAKEEGIVRIEIADYDADLFALEEYVRQQYGLEKLDLV
PNQVEDTPMDTLTNVAKTAAEVFRHVVKDGDKIGLSWGATLSCLMDELNPKAMKDVFIYPLAGGPSHINAKYHVNTLVYR
LARIFHGNSAFMNAMVIQEDKHLAKGILQSKYFNDILTSWDQLDLALVGIGGEPNSLEQSQWRDLLTSSDHDQLKYEKAV
GEVCCRFFDQAGQPVYTGLQDRTIGISLEQLRRVPKTMAVATGKHKAKAILAALKAGFINYLVTDKETMLAVLALDEDID
LNNVLL
>Mature_326_residues
MKEERRRLLAKVAYLHYVQGKSQTLISKEMNIYRTTVCRMLAKAKEEGIVRIEIADYDADLFALEEYVRQQYGLEKLDLV
PNQVEDTPMDTLTNVAKTAAEVFRHVVKDGDKIGLSWGATLSCLMDELNPKAMKDVFIYPLAGGPSHINAKYHVNTLVYR
LARIFHGNSAFMNAMVIQEDKHLAKGILQSKYFNDILTSWDQLDLALVGIGGEPNSLEQSQWRDLLTSSDHDQLKYEKAV
GEVCCRFFDQAGQPVYTGLQDRTIGISLEQLRRVPKTMAVATGKHKAKAILAALKAGFINYLVTDKETMLAVLALDEDID
LNNVLL

Specific function: Positively regulates, in the presence of L-sorbose, and negatively regulates, in the absence of L-sorbose, the transcription of the sor operon [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=332, Percent_Identity=27.710843373494, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787791, Length=323, Percent_Identity=25.3869969040248, Blast_Score=104, Evalue=7e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36685; Mature: 36685

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEERRRLLAKVAYLHYVQGKSQTLISKEMNIYRTTVCRMLAKAKEEGIVRIEIADYDAD
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCH
LFALEEYVRQQYGLEKLDLVPNQVEDTPMDTLTNVAKTAAEVFRHVVKDGDKIGLSWGAT
HHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHH
LSCLMDELNPKAMKDVFIYPLAGGPSHINAKYHVNTLVYRLARIFHGNSAFMNAMVIQED
HHHHHHHCCHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KHLAKGILQSKYFNDILTSWDQLDLALVGIGGEPNSLEQSQWRDLLTSSDHDQLKYEKAV
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
GEVCCRFFDQAGQPVYTGLQDRTIGISLEQLRRVPKTMAVATGKHKAKAILAALKAGFIN
HHHHHHHHHHCCCCEECCCCCCEECCCHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
YLVTDKETMLAVLALDEDIDLNNVLL
HHCCCHHHEEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKEERRRLLAKVAYLHYVQGKSQTLISKEMNIYRTTVCRMLAKAKEEGIVRIEIADYDAD
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCH
LFALEEYVRQQYGLEKLDLVPNQVEDTPMDTLTNVAKTAAEVFRHVVKDGDKIGLSWGAT
HHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHH
LSCLMDELNPKAMKDVFIYPLAGGPSHINAKYHVNTLVYRLARIFHGNSAFMNAMVIQED
HHHHHHHCCHHHHHCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
KHLAKGILQSKYFNDILTSWDQLDLALVGIGGEPNSLEQSQWRDLLTSSDHDQLKYEKAV
HHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH
GEVCCRFFDQAGQPVYTGLQDRTIGISLEQLRRVPKTMAVATGKHKAKAILAALKAGFIN
HHHHHHHHHHCCCCEECCCCCCEECCCHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHH
YLVTDKETMLAVLALDEDIDLNNVLL
HHCCCHHHEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7947968 [H]