Click here to switch to the map view.

The map label for this gene is ycfX [C]

Identifier: 15675481

GI number: 15675481

Start: 1314473

End: 1315396

Strand: Direct

Name: ycfX [C]

Synonym: SPy_1596

Alternate gene names: 15675481

Gene position: 1314473-1315396 (Clockwise)

Preceding gene: 15675468

Following gene: 15675485

Centisome position: 70.96

GC content: 44.48

Gene sequence:

>924_bases
ATGAGACATGATCGTCTATTCTACTATAATAAAGGAGAACACCTCATGAGCTTGTTATGTATTGATATAGGAGGCACTTC
CCTTAAATTTGCCCTCTGTCACAATGGCCAATTAAGCCAGCAAAGCAGCTTTCCCACTCCCTCTAGTCTGGAAAAGTTTT
ACCAATTACTCGACCAAGAAGTTGCTCGTTACTCTGCTTACCATTTCTCAGGTATTGCCATCAGTTCACCTGGGGCAGTC
AATAAAGAAAAGGGGGTTATCGAAGGCGCCAGCGCTATTCCCTACATTCACCATTTTAAAATACAAGAGGCCTTAGAAGA
ACGGCTACATTACCCTATTTCTATCGAAAATGATGCCAATTGTGCCGCCTTAGCTGAAGCTACCTTAGGGGCAGGAAAAG
GCGCTAGTAGCCTAGCCATGCTCGTTCTTGGTACTGGAGTTGGAGGAAGCTTGGTCATTGATGGCAAGATTTACCATGGT
GCCCACTTATTTGGGGGCGAGTTTGGTTTCATGATCATGAACGACCGCTACCAAACCTTTAGTCAGTTAGGGACAGTGGT
AAATATGGCCAAGCGCTATAGTGCAATCGTCAATAACGGAAAAGATTATACTGGCAAAGCTGTCCTTGCCCTCGCAGAAC
AAGGAGATCCCCTAGCACTCAAAGAAAGGCAGGTCTTTCTCCAAAGTTTAGCCATCGGTATTTTTAACATTCAACACGCC
TTTGATCCTCAACTGATTTTAATCGGGGGTGGTGTTTCCCAAGCTGACTTTCTACTGTCAGCGATTGAAGCTGAACTAGA
CAAACTCTACCAAGCCGTCGAAATCTCCGACCTTAGACCCCAATTAGCTATTTGTCACTTTAAAAACGAAGCTAATCTTC
TGGGAGCTGCCATTGATTTTTACCAAGAACACAAGGAGGCCTAA

Upstream 100 bases:

>100_bases
GCTTTCATTATTTGAAAGCAACAAATTATAGGTATGATAACACAAAGTATAGAATCACTTAGAAAGCCTTTTCATTGTTG
CTTAAATCTGTCATACTAAG

Downstream 100 bases:

>100_bases
CCATGGACCGCTAAATCCCTCTTATCCCCTATTGTCCCTAATCGCCTCTGACATCTACAAAGACATCCTAAAAGGATTGC
TGATTAGCTACAACGATACT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MRHDRLFYYNKGEHLMSLLCIDIGGTSLKFALCHNGQLSQQSSFPTPSSLEKFYQLLDQEVARYSAYHFSGIAISSPGAV
NKEKGVIEGASAIPYIHHFKIQEALEERLHYPISIENDANCAALAEATLGAGKGASSLAMLVLGTGVGGSLVIDGKIYHG
AHLFGGEFGFMIMNDRYQTFSQLGTVVNMAKRYSAIVNNGKDYTGKAVLALAEQGDPLALKERQVFLQSLAIGIFNIQHA
FDPQLILIGGGVSQADFLLSAIEAELDKLYQAVEISDLRPQLAICHFKNEANLLGAAIDFYQEHKEA

Sequences:

>Translated_307_residues
MRHDRLFYYNKGEHLMSLLCIDIGGTSLKFALCHNGQLSQQSSFPTPSSLEKFYQLLDQEVARYSAYHFSGIAISSPGAV
NKEKGVIEGASAIPYIHHFKIQEALEERLHYPISIENDANCAALAEATLGAGKGASSLAMLVLGTGVGGSLVIDGKIYHG
AHLFGGEFGFMIMNDRYQTFSQLGTVVNMAKRYSAIVNNGKDYTGKAVLALAEQGDPLALKERQVFLQSLAIGIFNIQHA
FDPQLILIGGGVSQADFLLSAIEAELDKLYQAVEISDLRPQLAICHFKNEANLLGAAIDFYQEHKEA
>Mature_307_residues
MRHDRLFYYNKGEHLMSLLCIDIGGTSLKFALCHNGQLSQQSSFPTPSSLEKFYQLLDQEVARYSAYHFSGIAISSPGAV
NKEKGVIEGASAIPYIHHFKIQEALEERLHYPISIENDANCAALAEATLGAGKGASSLAMLVLGTGVGGSLVIDGKIYHG
AHLFGGEFGFMIMNDRYQTFSQLGTVVNMAKRYSAIVNNGKDYTGKAVLALAEQGDPLALKERQVFLQSLAIGIFNIQHA
FDPQLILIGGGVSQADFLLSAIEAELDKLYQAVEISDLRPQLAICHFKNEANLLGAAIDFYQEHKEA

Specific function: Unknown

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI190014632, Length=167, Percent_Identity=29.940119760479, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI4885285, Length=167, Percent_Identity=29.3413173652695, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI298566325, Length=167, Percent_Identity=29.940119760479, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI298566315, Length=167, Percent_Identity=29.940119760479, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1787363, Length=301, Percent_Identity=27.906976744186, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87081733, Length=265, Percent_Identity=25.6603773584906, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787878, Length=292, Percent_Identity=23.972602739726, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 33446; Mature: 33446

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHDRLFYYNKGEHLMSLLCIDIGGTSLKFALCHNGQLSQQSSFPTPSSLEKFYQLLDQE
CCCCEEEEEECCHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
VARYSAYHFSGIAISSPGAVNKEKGVIEGASAIPYIHHFKIQEALEERLHYPISIENDAN
HHHHHHHEECCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCC
CAALAEATLGAGKGASSLAMLVLGTGVGGSLVIDGKIYHGAHLFGGEFGFMIMNDRYQTF
HHHHHHHHHCCCCCHHHEEEEEEECCCCCEEEECCEEEECEEEECCCEEEEEECCHHHHH
SQLGTVVNMAKRYSAIVNNGKDYTGKAVLALAEQGDPLALKERQVFLQSLAIGIFNIQHA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCC
FDPQLILIGGGVSQADFLLSAIEAELDKLYQAVEISDLRPQLAICHFKNEANLLGAAIDF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
YQEHKEA
HHHHCCC
>Mature Secondary Structure
MRHDRLFYYNKGEHLMSLLCIDIGGTSLKFALCHNGQLSQQSSFPTPSSLEKFYQLLDQE
CCCCEEEEEECCHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
VARYSAYHFSGIAISSPGAVNKEKGVIEGASAIPYIHHFKIQEALEERLHYPISIENDAN
HHHHHHHEECCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCC
CAALAEATLGAGKGASSLAMLVLGTGVGGSLVIDGKIYHGAHLFGGEFGFMIMNDRYQTF
HHHHHHHHHCCCCCHHHEEEEEEECCCCCEEEECCEEEECEEEECCCEEEEEECCHHHHH
SQLGTVVNMAKRYSAIVNNGKDYTGKAVLALAEQGDPLALKERQVFLQSLAIGIFNIQHA
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHEECCC
FDPQLILIGGGVSQADFLLSAIEAELDKLYQAVEISDLRPQLAICHFKNEANLLGAAIDF
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
YQEHKEA
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11792842; 8177218 [H]