Click here to switch to the map view.

The map label for this gene is yaaJ [C]

Identifier: 15675226

GI number: 15675226

Start: 1046656

End: 1047978

Strand: Direct

Name: yaaJ [C]

Synonym: SPy_1270

Alternate gene names: 15675226

Gene position: 1046656-1047978 (Clockwise)

Preceding gene: 15675217

Following gene: 15675227

Centisome position: 56.5

GC content: 42.63

Gene sequence:

>1323_bases
ATGATAGCACTCGTTAAATTAATTGATAACCTTGTTTGGGGACCGCCCCTCTTAATTTTATTGGTTGGGACGGGGATTTA
CCTTACCAGTCATTTAGGATTAATTCAAATCTTAAAACTACCAAGAGCCTTTAAACTCATTTTTTCAGATGACGAAGGAC
ATGGAGATATTTCATCCTTTGCTGCTCTTGCAACTGCCCTTGCCGCTACTGTCGGAACTGGTAACATTGTTGGGGTTGCC
ACTGCTATCAAGTCTGGTGGTCCTGGAGCGCTCTTTTGGATGTGGGTTGCCGCTTTTTTTGGAATGGCCACTAAGTACGC
TGAAGGGGTACTAGCGATTAAATACCGTACAAAGGATGCCAACGGTCATATTTCTGGTGGTCCTATGTACTATATTGTTA
ATGGCATGGGGACAAAATGGAAACCCTTAGCCGTTCTTTTTGCGGGTTCAGGGATCCTAGTTGCCCTATTTGGAATAGGA
ACCTTTGCTCAAGTGAACTCGATCACCTCGTCTTTAGGTCATAGCTTTGGCTTATCCCCACAAATGGTCAGTATTGTTTT
AGCTATCTTTGTGGCTGCCATTATTTTTGGTGGCATTCATTCCATTTCCAAAGTGGCTGAAAAAGTCGTTCCTTTTATGG
CTATTTTTTATATTCTATCTAGTTTAGCAGTTATTTTTAGTCACTACCAACAGCTACTTCCTGTTATTCGTTTAGTCTTT
CAATCAGCCTTCACTCCGACAGCTGCTATTGGAGGCTTTGCTGGAAGTCTCATGAAGGATGCCATTCAAAAAGGAATTGC
ACGCGGTGTCTTCTCCAATGAGTCTGGACTAAGATCTGCACCTATTGCTGCAGCAGCAGCTAAAACCAATGAACCCGTGG
AGCAGGGACTGATCTCCATGACAGGAACTTTTATTGATACGATTATTATCTGTACCCTAACCGGCCTATCTATTTTAGTA
ACAGGCCAATGGACTGGGCAGCTCGAAGGGGCTCCTCTGACCCAATCTGCCTTTGCCACTGTGTTTGGAAATTTAGGGAC
TTTTGGCCTAACCTTTTCCCTAGTTCTCTTCGCCTTTACAACGATTTTAGGATGGAGTTATTATGGAGAACGCTGCTTTG
AATTCCTCTTTGGCATTACACATCTCACCTACTTCCGTATTGTCTTTATCTTAATGGTAGGCCTAGGAGGCTTCCTTAAG
TTAGAACTAATTTGGGTTTTGGCTGATATTGTCAATGGTTTAATGGCACTTCCTAACCTGATTGCCCTCCTAGCTCTCTC
GCCAGTTGTTATTTTAGAAACCAAGCATTACTTTATTAAGTAA

Upstream 100 bases:

>100_bases
CTTTTTTGTGTTTGCTGTTTTATCATTGCTTCAGAAGTTGTCTCAAAGAAAGAGATAGCTTTTTTCTTTTGGCGTCTTCG
ATGACTTTTAGGAGAGAAAG

Downstream 100 bases:

>100_bases
ACATGACGTTAGTACTACCCAGTTATACCTAGTCTTCTTCTGCCAAGTTCAAGACGCTAGGCTTTTTTCTTAAGCCCCTT
TTTATGGTATAATATAAAGT

Product: Na(+)-linked D-alanine glycine permease

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MIALVKLIDNLVWGPPLLILLVGTGIYLTSHLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVA
TAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAVLFAGSGILVALFGIG
TFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVF
QSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLRSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILV
TGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLK
LELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK

Sequences:

>Translated_440_residues
MIALVKLIDNLVWGPPLLILLVGTGIYLTSHLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVA
TAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAVLFAGSGILVALFGIG
TFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVF
QSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLRSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILV
TGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLK
LELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK
>Mature_440_residues
MIALVKLIDNLVWGPPLLILLVGTGIYLTSHLGLIQILKLPRAFKLIFSDDEGHGDISSFAALATALAATVGTGNIVGVA
TAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDANGHISGGPMYYIVNGMGTKWKPLAVLFAGSGILVALFGIG
TFAQVNSITSSLGHSFGLSPQMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVF
QSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLRSAPIAAAAAKTNEPVEQGLISMTGTFIDTIIICTLTGLSILV
TGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFTTILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLK
LELIWVLADIVNGLMALPNLIALLALSPVVILETKHYFIK

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=433, Percent_Identity=40.4157043879908, Blast_Score=263, Evalue=2e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 46750; Mature: 46750

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIALVKLIDNLVWGPPLLILLVGTGIYLTSHLGLIQILKLPRAFKLIFSDDEGHGDISSF
CCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHH
AALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
NGHISGGPMYYIVNGMGTKWKPLAVLFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSP
CCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
QMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLRSAPIAAAAAKTNEPVEQGLISM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
TGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFT
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
TILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLKLELIWVLADIVNGLMALPNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IALLALSPVVILETKHYFIK
HHHHHHCCEEEEECCHHHCC
>Mature Secondary Structure
MIALVKLIDNLVWGPPLLILLVGTGIYLTSHLGLIQILKLPRAFKLIFSDDEGHGDISSF
CCHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHHHHHHCCHHHEEEECCCCCCCCHHHH
AALATALAATVGTGNIVGVATAIKSGGPGALFWMWVAAFFGMATKYAEGVLAIKYRTKDA
HHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCC
NGHISGGPMYYIVNGMGTKWKPLAVLFAGSGILVALFGIGTFAQVNSITSSLGHSFGLSP
CCCCCCCCEEEEEECCCCCCCCEEEEEECCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCH
QMVSIVLAIFVAAIIFGGIHSISKVAEKVVPFMAIFYILSSLAVIFSHYQQLLPVIRLVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSAFTPTAAIGGFAGSLMKDAIQKGIARGVFSNESGLRSAPIAAAAAKTNEPVEQGLISM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHH
TGTFIDTIIICTLTGLSILVTGQWTGQLEGAPLTQSAFATVFGNLGTFGLTFSLVLFAFT
HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
TILGWSYYGERCFEFLFGITHLTYFRIVFILMVGLGGFLKLELIWVLADIVNGLMALPNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IALLALSPVVILETKHYFIK
HHHHHHCCEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]